Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004797`

染色体: Chr08 坐标: 57297734-57301300 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004797`
名称	SmilChr08G004797
描述	putative disease resistance protein At1g50180
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57297734 - 57301300 / `-`

ID 对照

NCBI Gene ID	`LOC130999464`
GeneID	`130999464`
locus_tag	`-`
NCBI Name	`LOC130999464`
原始查询	`SmilChr08G004797`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein At1g50180
产物	putative disease resistance protein At1g50180
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=37.5; qcov=0.951; evalue=1.18e-88; confidence=medium
Rice	`Os11g0633500` - identity=29.8; qcov=0.96; evalue=1.41e-62; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13191 (AAA_16); PF18052 (Rx_N); PF23559 (WHD_DRP); PF24883 (NPHP3_N)
InterPro	-
eggNOG	-
NR	GeneID:130999464

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057780974.1`
2	Nucleus	细胞核	0.00000	`XP_057780974.1`
3	Chromosome	染色体	0.00000	`XP_057780974.1`
4	Centromere	着丝粒	0.00000	`XP_057780974.1`
5	Chromatin	染色质	0.00000	`XP_057780974.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57299453`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,C32,C68
`Chr8:57299475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:57299526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:57299537`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B132,B133,B48,B50,B58
`Chr8:57299621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B109,B74,C61,C9
`Chr8:57299639`	`TTG`	`T`	2bp_deletion	frameshift_variant	2	C8,D2
`Chr8:57299639`	`TTG`	`T`	2bp_deletion	CDS_variant	2	C8,D2
`Chr8:57299679`	`G`	`A`	EMS_canonical_SNV	stop_gained	34	A11,A16,A7,B100,B11,B113,B124,B130,B133,B17,B27,B28,B3,B30,B38,B45,B61,B62,B64,B69,B7,B70,B88,B95,B98,C13,C16,C33,C37,C70,C75,C80,C83,D3
`Chr8:57299707`	`AG`	`A`	1bp_deletion	frameshift_variant	22	A11,B117,B121,B132,B2,B36,B57,B65,B71,B72,B74,B88,B97,B98,C17,C25,C45,C69,C78,C80,D3,D5
`Chr8:57299717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:57299721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B49,B87
`Chr8:57299739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780974.1

549 aa

274

549

Rx_N

AAA_16

NB-ARC

NPHP3_N

WHD_DRP

PF18052 Rx_N 5-82 aa PF13191 AAA_16 164-286 aa PF00931 NB-ARC 168-346 aa PF24883 NPHP3_N 177-294 aa PF23559 WHD_DRP 433-506 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780974.1`	Pfam	`PF18052`	Rx_N	Domain	5	82	3.8e-17	62.9	Rx N-terminal domain
`XP_057780974.1`	Pfam	`PF13191`	AAA_16	Domain	164	286	2.7e-10	41.7	AAA ATPase domain
`XP_057780974.1`	Pfam	`PF00931`	NB-ARC	Domain	168	346	1.3e-35	123.3	NB-ARC domain
`XP_057780974.1`	Pfam	`PF24883`	NPHP3_N	Domain	177	294	3.3e-06	28.1	Nephrocystin 3, N-terminal
`XP_057780974.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	506	7.3e-11	42.7	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924991.1
AATCAAGACTCACATAGAGGAAATACTCTGTTTCGCAATCCAAATTCTTCGCAATCTCGATTGAAGAATTTGGAATTGTTGCGATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCCATTTGTTGTCGGAAGAAGCAAGGCTTTTATATGGTGTGAGTGACCAAGTGAGGCAGCTCGAGATCCAGCTCAAAGAGATGAAGTGTCTCCTCGAAGATGCTGACAAAAGACGACATGAAAGCAAAATCATTTTG...

CDS

1 records

下载 CDS FASTA

LOC130999464
ATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCCATTTGTTGTCGGAAGAAGCAAGGCTTTTATATGGTGTGAGTGACCAAGTGAGGCAGCTCGAGATCCAGCTCAAAGAGATGAAGTGTCTCCTCGAAGATGCTGACAAAAGACGACATGAAAGCAAAATCATTTTGAATTGGATCTCGGAGATAAAAGATCTTGTGCACGGAGCGGAGGCCGCCATTGAAAGACACGCAGCTTATCAAGTGATGTCAAG...

Protein

1 records

下载 Protein FASTA

XP_057780974.1
MAEAVVSTALETLRHLLSEEARLLYGVSDQVRQLEIQLKEMKCLLEDADKRRHESKIILNWISEIKDLVHGAEAAIERHAAYQVMSRRRRGLRHLIRRYSCILEKCYSLHQLASEISQIKSDLGRVTEAMRAYGIKNIIDRGESSSANNRARRSFPGFEVGDCFVGMEDELKQLGNLLRQDNEERVISVWGMGGSGKTTIAKKLYNETNTNFDLCAWVCITQQCQSFQSVWNDVLKQLEHQSSKVVSDEPQRIREDVVPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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