Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004811`

染色体: Chr08 坐标: 57406997-57413643 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004811`
名称	SmilChr08G004811
描述	uncharacterized SmilChr08G004811
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57406997 - 57413643 / `-`

ID 对照

NCBI Gene ID	`LOC130999469`
GeneID	`130999469`
locus_tag	`-`
NCBI Name	`LOC130999469`
原始查询	`SmilChr08G004811`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:819928]; symbol=AT3G07400; hit=AT3G07400; species=arabidopsis; confidence=high
产物	lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:819928]; symbol=AT3G07400; hit=AT3G07400; species=arabidopsis; confidence=high
Arabidopsis	`AT3G07400` (AT3G07400) lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:819928] identity=60.6; qcov=0.995; evalue=0; confidence=high
Rice	`Os02g0481700` - identity=51.5; qcov=0.619; evalue=6.02e-173; confidence=high
GO	GO:0006629 (lipid metabolic process)
KEGG	-
Pfam	PF01764 (Lipase_3)
InterPro	-
eggNOG	-
NR	GeneID:130999469

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast membrane	叶绿体膜	1.00000	`XP_057780982.1`
2	Chloroplast	叶绿体	0.60000	`XP_057780981.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057780981.1`
4	Nucleus	细胞核	0.00000	`XP_057780982.1`
5	Chromosome	染色体	0.00000	`XP_057780982.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57407241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,C47,C87
`Chr8:57407244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B15,B87,C82,C85
`Chr8:57407285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B4,B48,B79,C44
`Chr8:57407287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B42,B45,C30,C4,C84
`Chr8:57407652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:57408043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr8:57408096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr8:57408134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:57408450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:57408800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr8:57408874`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C60
`Chr8:57408874`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780981.1

1018 aa

509

1018

Lipase_3

PF01764 Lipase_3 197-306 aa

XP_057780982.1

839 aa

420

839

Lipase_3

PF01764 Lipase_3 22-127 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780981.1`	Pfam	`PF01764`	Lipase_3	Domain	197	306	5.2e-16	59.5	Lipase (class 3)
`XP_057780982.1`	Pfam	`PF01764`	Lipase_3	Domain	22	127	5.4e-16	59.5	Lipase (class 3)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057924998.1
TGATTCGGGCATTATTCCTACTGCGTAGAGCCAAATCCCCTGCTTTCTACCAAATAACCGCCACATTTCCCCATCTCTCTCATTCCTCTCTCTCTCTCTCTACCCTAATTAAATCTAATTAGGGTTTACTGATTGATTGATGGGGTGATGGATACGCTGCAGAGACGGGTGGAGACTTGGATCAAGGATCAGAGCACCAAAATCCTCAAGGTGACGTGGCCTCCGCCGTGGAGGATCTCCGTGAAGTGGCCGTGGCAGGA...

XM_057924999.1
AATTTAAGGCTGACTTTGGAGGGCATTTAGTTTCTTTAGAGCGTGTACAACCATGTTCAGATCATGTTCCTCACAGGTATCTATTAGCTGAAGCAGGAGACACTTTATTTGCTTCCTTCATTGGGACTAAGCGGTACAAGTGCCATATTCCATGATAGTGCAACGGAAGACATAAATAGGATTGATTATATAGAAACTGATGGTCAAATGAGTAATGGGAAGAGCAGCACGATTCATATAGAAACCAACCATAAACCAAC...

CDS

2 records

下载 CDS FASTA

LOC130999469
ATGGATACGCTGCAGAGACGGGTGGAGACTTGGATCAAGGATCAGAGCACCAAAATCCTCAAGGTGACGTGGCCTCCGCCGTGGAGGATCTCCGTGAAGTGGCCGTGGCAGGACGGCCGCCGCGAGCAGCAGAGGAGGCTCCAGGAGGAGCTCGAACGCCGCAAAAAGCAATGGCAGGAGCTCTGCTGTGCCGTCAAGGCGGAGACGCTCTCCGATTTGCAGGAAATCTTGTGCTGCATGGTCCTCTCCGAATGTGTCTA...

LOC130999469
ATGAGTAATGGGAAGAGCAGCACGATTCATATAGAAACCAACCATAAACCAACAAATTCTACTCCAAAGCCTGCTGTTCATCGGGGATTCATGGCTCGTGCTAAAGGAATTCCGGCATTGGAATTATACAGGCTAGCCCAGAAAAAGAGACGAAAACTGGTGTTATGTGGGCATTCACTTGGTGGAGCAGTAGCTGTTTTGGCAACCCTTGCAATTTTGAGAGTTATCGCTGTTACATCTACTGAAAAGATACAGGTGAA...

Protein

2 records

下载 Protein FASTA

XP_057780981.1
MDTLQRRVETWIKDQSTKILKVTWPPPWRISVKWPWQDGRREQQRRLQEELERRKKQWQELCCAVKAETLSDLQEILCCMVLSECVYKRPATEMLRAVNKFKADFGGHLVSLERVQPCSDHVPHRYLLAEAGDTLFASFIGTKRYKDIMADANIFQGAIFHDSATEDINRIDYIETDGQMSNGKSSTIHIETNHKPTNSTPKPAVHRGFMARAKGIPALELYRLAQKKRRKLVLCGHSLGGAVAVLATLAILRVIAVTST...

XP_057780982.1
MSNGKSSTIHIETNHKPTNSTPKPAVHRGFMARAKGIPALELYRLAQKKRRKLVLCGHSLGGAVAVLATLAILRVIAVTSTEKIQVKCITFSQPPVGNAALRDYVNGKGWHHYFKTYCIPEDLVPRILSPAYFHHYNSQNPTGPDVTETSPSVSKYGEGFEKQKANRLKENEGEQLVLGLGPVQNPFWRLSRLVPIEGLRRQFYNKGNRVEPIETAATDSAATSTIDDLVTTPQSLEIEEGSDGISLRPLPNKREDITGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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