当前解析结果
SmilChr08G004818| 统一新 Gene ID | SmilChr08G004818 |
|---|---|
| 名称 | SmilChr08G004818 |
| 描述 | E3 ubiquitin-protein ligase CHIP |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57460803 - 57465217 / + |
| NCBI Gene ID | LOC130999480 |
|---|---|
| GeneID | 130999480 |
| locus_tag | - |
| NCBI Name | LOC130999480 |
| 原始查询 | SmilChr08G004818 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase CHIP |
| 产物 | E3 ubiquitin-protein ligase CHIP |
| Arabidopsis | AT3G07370 (CHIP)carboxyl terminus of HSC70-interacting protein [Source:NCBI gene (formerly Entrezgene);Acc:819925] identity=70.2; qcov=0.973; evalue=2.72e-111; confidence=high |
| Rice | Os08g0113300 (OsPUB68)- identity=56.9; qcov=0.643; evalue=8.68e-46; confidence=medium |
| GO | GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006515 (protein quality control for misfolded or incompletely synthesized proteins); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0045862 (positive regulation of proteolysis); GO:0051087 (protein-folding chaperone binding); GO:0061630 (ubiquitin protein ligase activity); GO:0071218 (cellular response to misfolded protein) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04564 (U-box); PF12895 (ANAPC3); PF13181 (TPR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999480 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780994.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057780999.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057780999.1 |
| 4 | Nucleoplasm | 核质 | 1.00000 | XP_057781000.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780994.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57463253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,C56 |
Chr8:57464067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:57464176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B56,B96,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780994.1PF13181
TPR_8 17-42 aa
PF12895
ANAPC3 45-104 aa
PF13181
TPR_8 79-107 aa
PF04564
U-box 200-271 aa
XP_057780995.1PF13181
TPR_8 17-42 aa
PF12895
ANAPC3 45-104 aa
PF13181
TPR_8 79-107 aa
PF04564
U-box 200-271 aa
XP_057780996.1PF13181
TPR_8 17-42 aa
PF12895
ANAPC3 45-104 aa
PF13181
TPR_8 79-107 aa
PF04564
U-box 200-271 aa
XP_057780998.1PF13181
TPR_8 17-42 aa
PF12895
ANAPC3 45-104 aa
PF13181
TPR_8 79-107 aa
PF04564
U-box 200-271 aa
XP_057780999.1PF04564
U-box 171-242 aa
XP_057781000.1PF04564
U-box 147-218 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780994.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 17 | 42 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780994.1 |
Pfam | PF12895 |
ANAPC3 | Repeat | 45 | 104 | 7.5e-07 | 30.1 | Anaphase-promoting complex, cyclosome, subunit 3 |
XP_057780994.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 79 | 107 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780994.1 |
Pfam | PF04564 |
U-box | Domain | 200 | 271 | 9.8e-27 | 93.6 | U-box domain |
XP_057780995.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 17 | 42 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780995.1 |
Pfam | PF12895 |
ANAPC3 | Repeat | 45 | 104 | 7.5e-07 | 30.1 | Anaphase-promoting complex, cyclosome, subunit 3 |
XP_057780995.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 79 | 107 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780995.1 |
Pfam | PF04564 |
U-box | Domain | 200 | 271 | 9.8e-27 | 93.6 | U-box domain |
XP_057780996.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 17 | 42 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780996.1 |
Pfam | PF12895 |
ANAPC3 | Repeat | 45 | 104 | 7.5e-07 | 30.1 | Anaphase-promoting complex, cyclosome, subunit 3 |
XP_057780996.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 79 | 107 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780996.1 |
Pfam | PF04564 |
U-box | Domain | 200 | 271 | 9.8e-27 | 93.6 | U-box domain |
XP_057780998.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 17 | 42 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780998.1 |
Pfam | PF12895 |
ANAPC3 | Repeat | 45 | 104 | 7.5e-07 | 30.1 | Anaphase-promoting complex, cyclosome, subunit 3 |
XP_057780998.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 79 | 107 | 3e-08 | 33.9 | Tetratricopeptide repeat |
XP_057780998.1 |
Pfam | PF04564 |
U-box | Domain | 200 | 271 | 9.8e-27 | 93.6 | U-box domain |
XP_057780999.1 |
Pfam | PF04564 |
U-box | Domain | 171 | 242 | 8.8e-27 | 93.8 | U-box domain |
XP_057781000.1 |
Pfam | PF04564 |
U-box | Domain | 147 | 218 | 7.1e-27 | 94.1 | U-box domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。