Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004823`

染色体: Chr08 坐标: 57501834-57507168 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004823`
名称	SmilChr08G004823
描述	pentatricopeptide repeat-containing protein At3g25210, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57501834 - 57507168 / `-`

ID 对照

NCBI Gene ID	`LOC130999486`
GeneID	`130999486`
locus_tag	`-`
NCBI Name	`LOC130999486`
原始查询	`SmilChr08G004823`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g25210, mitochondrial
产物	pentatricopeptide repeat-containing protein At3g25210%2C mitochondrial
Arabidopsis	`AT3G25210` (AT3G25210) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822114] identity=60.6; qcov=1; evalue=6.43e-170; confidence=high
Rice	`Os06g0184866` - identity=46.2; qcov=0.883; evalue=3.36e-112; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro	-
eggNOG	-
NR	GeneID:130999486

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057781008.1`
2	Nucleus	细胞核	0.00000	`XP_057781008.1`
3	Chromosome	染色体	0.00000	`XP_057781008.1`
4	Centromere	着丝粒	0.00000	`XP_057781008.1`
5	Chromatin	染色质	0.00000	`XP_057781008.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57506079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,C74,C76
`Chr8:57506242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,C6,C64
`Chr8:57506373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B45,C45
`Chr8:57506438`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B24
`Chr8:57506438`	`G`	`GA`	1bp_insertion	CDS_variant	1	B24
`Chr8:57506603`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr8:57506753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr8:57506804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:57506903`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B16
`Chr8:57506903`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B16
`Chr8:57506919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B99,C1,C67
`Chr8:57506940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,C74,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781008.1

377 aa

188

377

PPR_long

PPR_3

PPR_1

PPR_2

PPR_long

PPR

PPR_1

PPR

PPR_1

PPR_2

PF17177 PPR_long 151-284 aa PF13812 PPR_3 207-263 aa PF12854 PPR_1 215-246 aa PF13041 PPR_2 218-266 aa PF17177 PPR_long 222-366 aa PF01535 PPR 223-251 aa PF12854 PPR_1 250-282 aa PF01535 PPR 256-286 aa PF12854 PPR_1 320-349 aa PF13041 PPR_2 323-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781008.1`	Pfam	`PF17177`	PPR_long	Repeat	151	284	3.6e-19	69.7	Pentacotripeptide-repeat region of PRORP
`XP_057781008.1`	Pfam	`PF13812`	PPR_3	Repeat	207	263	4.8e-16	59.3	Pentatricopeptide repeat domain
`XP_057781008.1`	Pfam	`PF12854`	PPR_1	Repeat	215	246	8.2e-27	93.4	PPR repeat
`XP_057781008.1`	Pfam	`PF13041`	PPR_2	Repeat	218	266	5.7e-42	142.3	PPR repeat family
`XP_057781008.1`	Pfam	`PF17177`	PPR_long	Repeat	222	366	3.6e-19	69.7	Pentacotripeptide-repeat region of PRORP
`XP_057781008.1`	Pfam	`PF01535`	PPR	Repeat	223	251	4.2e-17	61.8	PPR repeat
`XP_057781008.1`	Pfam	`PF12854`	PPR_1	Repeat	250	282	8.2e-27	93.4	PPR repeat
`XP_057781008.1`	Pfam	`PF01535`	PPR	Repeat	256	286	4.2e-17	61.8	PPR repeat
`XP_057781008.1`	Pfam	`PF12854`	PPR_1	Repeat	320	349	8.2e-27	93.4	PPR repeat
`XP_057781008.1`	Pfam	`PF13041`	PPR_2	Repeat	323	370	5.7e-42	142.3	PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925025.1
ATGGCCCTCATTTTACCTCGTACCATCCGAGCTTCCCTCCTCCGTCTCTCTGTCCGCCACCTCACCTCCACCACTTTCGACGACCCTCCGCCGCCGCCGACTCTATCCGTCACCCCTCAAACCCTACCACCCAAACCCCCAAATCCTCGCTCCCGAACCCCAATGGAAAATCAATTCGAGTCGTGGCTTCACAAACTAAAGCCCGGATTCACTCATTCCGACGTCGACGACGCCCTCCGGGCCCAGCCCGACCCGGACAT...

CDS

1 records

下载 CDS FASTA

LOC130999486
ATGGCCCTCATTTTACCTCGTACCATCCGAGCTTCCCTCCTCCGTCTCTCTGTCCGCCACCTCACCTCCACCACTTTCGACGACCCTCCGCCGCCGCCGACTCTATCCGTCACCCCTCAAACCCTACCACCCAAACCCCCAAATCCTCGCTCCCGAACCCCAATGGAAAATCAATTCGAGTCGTGGCTTCACAAACTAAAGCCCGGATTCACTCATTCCGACGTCGACGACGCCCTCCGGGCCCAGCCCGACCCGGACAT...

Protein

1 records

下载 Protein FASTA

XP_057781008.1
MALILPRTIRASLLRLSVRHLTSTTFDDPPPPPTLSVTPQTLPPKPPNPRSRTPMENQFESWLHKLKPGFTHSDVDDALRAQPDPDIALDIFRWTAQQRHYRHNHVTYLSMMEIAVSGKRYRAAETLIDEVLAGACAASLPLFNTMIKFCCDRKFLFNRAFDVYKKMLKSEDARPNLETYAMLFGSLLRKFDKLNVCYVYLHAVRSLSKQMKSSGVIPDAFVLNMIIKAYSKCLQVDEAIRVFREMGLYGCEPNSYTYSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器