Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004840`

染色体: Chr08 坐标: 57676645-57679415 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004840`
名称	SmilChr08G004840
描述	pentatricopeptide repeat-containing protein At3g07290, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57676645 - 57679415 / `+`

ID 对照

NCBI Gene ID	`LOC130998820`
GeneID	`130998820`
locus_tag	`-`
NCBI Name	`LOC130998820`
原始查询	`SmilChr08G004840`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g07290, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At3g07290%2C mitochondrial-like
Arabidopsis	`AT3G07290` (AT3G07290) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819917] identity=46.2; qcov=0.983; evalue=0; confidence=high
Rice	`Os08g0300700` (P0045D08.129) - identity=30.9; qcov=0.811; evalue=3.68e-98; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130998820

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057780208.1`
2	Chloroplast	叶绿体	0.20000	`XP_057780208.1`
3	Nucleus	细胞核	0.00000	`XP_057780208.1`
4	Chromosome	染色体	0.00000	`XP_057780208.1`
5	Centromere	着丝粒	0.00000	`XP_057780208.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57676813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:57676816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C19
`Chr8:57676854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,A9
`Chr8:57676996`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B118
`Chr8:57676996`	`TG`	`T`	1bp_deletion	CDS_variant	1	B118
`Chr8:57677024`	`T`	`TCG`	2bp_insertion	frameshift_variant	26	A2,A5,A9,B109,B118,B120,B122,B126,B131,B139,B17,B2,B57,B67,B77,B91,C14,C25,C31,C41,C42,C52,C61,C65,C82,D7
`Chr8:57677026`	`TTG`	`T`	2bp_deletion	frameshift_variant	26	A2,A5,A9,B109,B118,B120,B122,B126,B131,B139,B17,B2,B57,B67,B77,B91,C14,C25,C31,C41,C42,C52,C61,C65,C82,D7
`Chr8:57677219`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B79
`Chr8:57677219`	`CG`	`C`	1bp_deletion	CDS_variant	1	B79
`Chr8:57677293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:57677300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C76,D8
`Chr8:57677310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780208.1

862 aa

431

862

PPR

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_long

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

TPR_24

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR

PF01535 PPR 161-190 aa PF01535 PPR 197-224 aa PF13041 PPR_2 228-276 aa PF01535 PPR 232-259 aa PF12854 PPR_1 260-283 aa PF01535 PPR 266-283 aa PF01535 PPR 286-306 aa PF13041 PPR_2 286-322 aa PF17177 PPR_long 292-405 aa PF13812 PPR_3 297-357 aa PF12854 PPR_1 305-336 aa PF01535 PPR 311-341 aa PF13041 PPR_2 317-357 aa PF12854 PPR_1 339-372 aa PF13041 PPR_2 343-392 aa PF01535 PPR 346-376 aa PF13812 PPR_3 362-388 aa PF12854 PPR_1 375-405 aa PF13041 PPR_2 378-427 aa PF01535 PPR 382-410 aa PF13812 PPR_3 402-458 aa PF12854 PPR_1 409-441 aa PF13041 PPR_2 413-462 aa PF23276 TPR_24 414-507 aa PF01535 PPR 416-446 aa PF12854 PPR_1 445-473 aa PF01535 PPR 451-480 aa PF13041 PPR_2 451-497 aa PF13812 PPR_3 477-529 aa PF12854 PPR_1 481-512 aa PF01535 PPR 486-516 aa PF13812 PPR_3 545-597 aa PF12854 PPR_1 550-582 aa PF13041 PPR_2 553-602 aa PF01535 PPR 556-586 aa PF12854 PPR_1 585-617 aa PF01535 PPR 591-621 aa PF13041 PPR_2 596-635 aa PF13812 PPR_3 612-668 aa PF12854 PPR_1 620-651 aa PF01535 PPR 626-656 aa PF01535 PPR 793-817 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	161	190	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	197	224	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	228	276	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	232	259	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	260	283	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	266	283	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	286	306	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	286	322	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF17177`	PPR_long	Repeat	292	405	3.1e-32	112.4	Pentacotripeptide-repeat region of PRORP
`XP_057780208.1`	Pfam	`PF13812`	PPR_3	Repeat	297	357	2.2e-58	194.9	Pentatricopeptide repeat domain
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	305	336	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	311	341	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	317	357	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	339	372	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	343	392	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	346	376	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13812`	PPR_3	Repeat	362	388	2.2e-58	194.9	Pentatricopeptide repeat domain
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	375	405	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	378	427	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	382	410	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13812`	PPR_3	Repeat	402	458	2.2e-58	194.9	Pentatricopeptide repeat domain
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	409	441	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	413	462	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF23276`	TPR_24	Repeat	414	507	2.5e-31	109.1	Pentatricopeptide repeat-containing protein
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	416	446	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	445	473	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	451	480	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	451	497	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF13812`	PPR_3	Repeat	477	529	2.2e-58	194.9	Pentatricopeptide repeat domain
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	481	512	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	486	516	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13812`	PPR_3	Repeat	545	597	2.2e-58	194.9	Pentatricopeptide repeat domain
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	550	582	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	553	602	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	556	586	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	585	617	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	591	621	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF13041`	PPR_2	Repeat	596	635	1.8e-126	412.8	PPR repeat family
`XP_057780208.1`	Pfam	`PF13812`	PPR_3	Repeat	612	668	2.2e-58	194.9	Pentatricopeptide repeat domain
`XP_057780208.1`	Pfam	`PF12854`	PPR_1	Repeat	620	651	1e-114	374.6	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	626	656	2.8e-88	284.9	PPR repeat
`XP_057780208.1`	Pfam	`PF01535`	PPR	Repeat	793	817	2.8e-88	284.9	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924225.1
ATGTTGCTTCGCGCTTTCAGAGCTCAACCCCTCTCGCATAAACCCCATTTCCGCGCCCTTCAGTCGCTCGCGCCGCTTTGCGCAGCTGCAGCGGCTCGCCCATTTTCATCTAACGACGCCGTTTCCGACGTCTCAGCCCTGATCAAGAAGCCCAATTGGGAGAAGAGCGCTCGCTTAGAAACCCTAGCTTCTCACTTGAGCCCGCACTCGGTTTCCAGAGTCATAGCCGCCCACAGCGGAGATATCCCACTCTGCCTCAC...

CDS

1 records

下载 CDS FASTA

LOC130998820
ATGTTGCTTCGCGCTTTCAGAGCTCAACCCCTCTCGCATAAACCCCATTTCCGCGCCCTTCAGTCGCTCGCGCCGCTTTGCGCAGCTGCAGCGGCTCGCCCATTTTCATCTAACGACGCCGTTTCCGACGTCTCAGCCCTGATCAAGAAGCCCAATTGGGAGAAGAGCGCTCGCTTAGAAACCCTAGCTTCTCACTTGAGCCCGCACTCGGTTTCCAGAGTCATAGCCGCCCACAGCGGAGATATCCCACTCTGCCTCAC...

Protein

1 records

下载 Protein FASTA

XP_057780208.1
MLLRAFRAQPLSHKPHFRALQSLAPLCAAAAARPFSSNDAVSDVSALIKKPNWEKSARLETLASHLSPHSVSRVIAAHSGDIPLCLTFLKWVCQKSTYCYDLDSRIQLLKTMASDNLWGVSHKVLIFLIKECCTSQDDLLKLIHAIEEMRENLGFRINYPCYSVLLMRLAKLDLGLIAFSVFNRMLEDGFVAGEIDYMALVNALCKNGFVLAAEMFVSTVVKLGFALDVRLCTSLVLGNCRAREVDEAFKVFAVMSGEGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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