Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004845`

染色体: Chr08 坐标: 57697474-57700463 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004845`
名称	SmilChr08G004845
描述	uncharacterized SmilChr08G004845
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57697474 - 57700463 / `+`

ID 对照

NCBI Gene ID	`LOC130998823`
GeneID	`130998823`
locus_tag	`-`
NCBI Name	`LOC130998823`
原始查询	`SmilChr08G004845`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:822107]; symbol=AT3G25160; hit=AT3G25160; species=arabidopsis; confidence=high
产物	ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:822107]; symbol=AT3G25160; hit=AT3G25160; species=arabidopsis; confidence=high
Arabidopsis	`AT3G25160` (AT3G25160) ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:822107] identity=62.3; qcov=0.945; evalue=1.54e-113; confidence=high
Rice	`Os09g0534200` (OsGL1B) - identity=57; qcov=0.956; evalue=1.41e-105; confidence=high
GO	GO:0006621 (protein retention in ER lumen); GO:0016020 (membrane); GO:0046923 (ER lumen protein retrieval receptor activity)
KEGG	-
Pfam	PF00810 (ER_lumen_recept)
InterPro	-
eggNOG	-
NR	GeneID:130998823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057780210.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057780210.1`
3	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057780210.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057780210.1`
5	Endoplasmic reticulum-golgi intermediate compartment	Endoplasmic reticulum-golgi intermediate compartment	0.20000	`XP_057780210.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57697523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr8:57697554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B20,C34,C49
`Chr8:57697564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C66
`Chr8:57697576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C66
`Chr8:57697647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,D1
`Chr8:57698420`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C11
`Chr8:57698420`	`GA`	`G`	1bp_deletion	CDS_variant	1	C11
`Chr8:57698432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B133,B66,C27,C35
`Chr8:57698459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr8:57698487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B40,B48,B87,C61
`Chr8:57698518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B29,C40,C72,C73
`Chr8:57699432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B37,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780210.1

275 aa

138

275

ER_lumen_recept

PF00810 ER_lumen_recept 68-210 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780210.1`	Pfam	`PF00810`	ER_lumen_recept	Repeat	68	210	4.4e-42	145.0	ER lumen protein retaining receptor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924227.1
ATGTGGACGAGGATTACGGCGCCGTTTTACAAGATTCTTGCATGGCTGCGGCGGCGGTCAACGATAGTCAAGGCCCTCCTCGCGGCGGCGGCGGCGCTCTGCGCGGTGGCGACGCTGAAACTGACCCATTTCTTCGTCGCGTCTGAGGCGATCCATTTCCTTGGGATTTTGGTGTTGATTTATAAGCTCACCACTCTCAAAACGTGCTCCGGGCTCTCCTTGAAGGCACAAGAGCTTACAGCTACATTCTTGGCATCAAG...

CDS

1 records

下载 CDS FASTA

LOC130998823
ATGTGGACGAGGATTACGGCGCCGTTTTACAAGATTCTTGCATGGCTGCGGCGGCGGTCAACGATAGTCAAGGCCCTCCTCGCGGCGGCGGCGGCGCTCTGCGCGGTGGCGACGCTGAAACTGACCCATTTCTTCGTCGCGTCTGAGGCGATCCATTTCCTTGGGATTTTGGTGTTGATTTATAAGCTCACCACTCTCAAAACGTGCTCCGGGCTCTCCTTGAAGGCACAAGAGCTTACAGCTACATTCTTGGCATCAAG...

Protein

1 records

下载 Protein FASTA

XP_057780210.1
MWTRITAPFYKILAWLRRRSTIVKALLAAAAALCAVATLKLTHFFVASEAIHFLGILVLIYKLTTLKTCSGLSLKAQELTATFLASRLCCSFFMERDIHTVLDCLILVSTLWIVYKMRFELKSTYISKLDNMPLYYVIVPCAILAMLVHPRTYQGRPVRMLWAFAVYLESISVLPQLKMIQNAKIIEPFTAHYVFALGIARFLGCAHWIIKVYKSSGRYLYLVGAGYIWFPMVLLAEIVQTFILADFCYYYIKGLMDGRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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