当前解析结果
SmilChr08G004864| 统一新 Gene ID | SmilChr08G004864 |
|---|---|
| 名称 | SmilChr08G004864 |
| 描述 | GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57806448 - 57809703 / + |
| NCBI Gene ID | LOC130999523 |
|---|---|
| GeneID | 130999523 |
| locus_tag | - |
| NCBI Name | LOC130999523 |
| 原始查询 | SmilChr08G004864 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic-like |
| 产物 | GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2%2C chloroplastic-like |
| Arabidopsis | AT4G10620 (AT4G10620)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826654] identity=57.8; qcov=0.982; evalue=0; confidence=high |
| Rice | Os09g0364500- identity=52; qcov=0.936; evalue=0; confidence=high |
| GO | GO:0005525 (GTP binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01926 (MMR_HSR1); PF21516 (YqeH-like_C); PF28564 (GEP3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057781055.1 |
| 2 | Chloroplast | 叶绿体 | 0.80000 | XP_057781055.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781055.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781055.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781055.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57806589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B40,B5 |
Chr8:57806601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B60,C55,C59 |
Chr8:57806790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B15,B94,C58 |
Chr8:57807028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B136,C12,C72,C84 |
Chr8:57807031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,C54 |
Chr8:57807120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B56,B96 |
Chr8:57807165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B104,B120,B56,B96 |
Chr8:57807424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B21,B28,B55,B72 |
Chr8:57807452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:57807475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B24,C8 |
Chr8:57807563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
Chr8:57807573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781055.1PF28564
GEP3_N 96-199 aa
PF01926
MMR_HSR1 339-413 aa
PF21516
YqeH-like_C 455-553 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781055.1 |
Pfam | PF28564 |
GEP3_N | Domain | 96 | 199 | 6.8e-09 | 37.1 | Genetic interactor of prohibitins 3 N-terminal domain |
XP_057781055.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 339 | 413 | 3.3e-10 | 40.8 | 50S ribosome-binding GTPase |
XP_057781055.1 |
Pfam | PF21516 |
YqeH-like_C | Domain | 455 | 553 | 4.6e-10 | 40.6 | YqeH-like, C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。