当前解析结果
SmilChr08G004868| 统一新 Gene ID | SmilChr08G004868 |
|---|---|
| 名称 | SmilChr08G004868 |
| 描述 | non-specific lipid transfer protein GPI-anchored 14-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57834415 - 57835600 / + |
| NCBI Gene ID | LOC130999528 |
|---|---|
| GeneID | 130999528 |
| locus_tag | - |
| NCBI Name | LOC130999528 |
| 原始查询 | SmilChr08G004868 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | non-specific lipid transfer protein GPI-anchored 14-like |
| 产物 | non-specific lipid transfer protein GPI-anchored 14-like |
| Arabidopsis | AT1G55260 (AT1G55260)Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841970] identity=41.9; qcov=0.937; evalue=1.07e-45; confidence=medium |
| Rice | Os03g0167000 (OsLTPG2)- identity=53.6; qcov=0.654; evalue=1.18e-42; confidence=medium |
| GO | GO:0006869 (lipid transport); GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF00234 (Tryp_alpha_amyl); PF14368 (LTP_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999528 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781059.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057781059.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781059.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781059.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781059.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57834739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B110,B26,B87,D7 |
Chr8:57834751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C18,C33,C36,C51 |
Chr8:57834787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B7,B75,C49,D6 |
Chr8:57835082 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B77 |
Chr8:57835298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr8:57835326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C49,D10 |
Chr8:57835329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C49,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781059.1PF14368
LTP_2 26-106 aa
PF00234
Tryp_alpha_amyl 31-105 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781059.1 |
Pfam | PF14368 |
LTP_2 | Family | 26 | 106 | 7.7e-14 | 52.3 | Probable lipid transfer |
XP_057781059.1 |
Pfam | PF00234 |
Tryp_alpha_amyl | Domain | 31 | 105 | 2.3e-11 | 44.5 | Protease inhibitor/seed storage/LTP family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。