Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004870`

染色体: Chr08 坐标: 57837692-57842046 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004870`
名称	SmilChr08G004870
描述	DEAD-box ATP-dependent RNA helicase 37-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57837692 - 57842046 / `-`

ID 对照

NCBI Gene ID	`LOC130999529`
GeneID	`130999529`
locus_tag	`-`
NCBI Name	`LOC130999529`
原始查询	`SmilChr08G004870`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 37-like
产物	DEAD-box ATP-dependent RNA helicase 37-like
Arabidopsis	`AT2G42520` (AT2G42520) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818852] identity=74.3; qcov=0.929; evalue=0; confidence=high
Rice	`Os03g0805200` (OsRH37) - identity=70.7; qcov=0.987; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00270 (DEAD); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:130999529

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781061.1`
2	Cytoplasm	细胞质	1.00000	`XP_057781061.1`
3	Cytoplasmic granule	细胞质颗粒	1.00000	`XP_057781061.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057781061.1`
5	Stress granule	Stress granule	0.60000	`XP_057781061.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57838426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B32,C13,C26
`Chr8:57838518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,C60
`Chr8:57838599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,B8,B88,C38,D11
`Chr8:57839637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:57840759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781061.1

619 aa

310

619

DEAD

Helicase_C

PF00270 DEAD 181-362 aa PF00271 Helicase_C 398-513 aa

XP_057781062.1

619 aa

310

619

DEAD

Helicase_C

PF00270 DEAD 181-362 aa PF00271 Helicase_C 398-513 aa

XP_057781063.1

619 aa

310

619

DEAD

Helicase_C

PF00270 DEAD 181-362 aa PF00271 Helicase_C 398-513 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781061.1`	Pfam	`PF00270`	DEAD	Domain	181	362	6.2e-50	169.9	DEAD/DEAH box helicase
`XP_057781061.1`	Pfam	`PF00271`	Helicase_C	Domain	398	513	1.8e-33	115.8	Helicase conserved C-terminal domain
`XP_057781062.1`	Pfam	`PF00270`	DEAD	Domain	181	362	6.2e-50	169.9	DEAD/DEAH box helicase
`XP_057781062.1`	Pfam	`PF00271`	Helicase_C	Domain	398	513	1.8e-33	115.8	Helicase conserved C-terminal domain
`XP_057781063.1`	Pfam	`PF00270`	DEAD	Domain	181	362	6.2e-50	169.9	DEAD/DEAH box helicase
`XP_057781063.1`	Pfam	`PF00271`	Helicase_C	Domain	398	513	1.8e-33	115.8	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925080.1
AAAAAATGAAATGAGAGAAGGGAAAAACGTATAGAGCCCCTAAAAAAAATAATGGTGGTATCGCGTATTAAGCAGAAACGCAAACTTCGAAGACTATAAATACGTTGGAAGAAATTTAGAGAGAAAATCTATAGACCTTTTTAGAGAGAGAAAGCGGAAATTCAACAGCATCGCACAAGATATTTTACGCACCAGCGCCTCCGATCGCACATCCTCTGCCCCAAATTAGGGTTTCTTTATCATCTACCTTTAATCATATC...

XM_057925079.1
TCGAAGACTATAAATACGTTGGAAGAAATTTAGAGAGAAAATCTATAGACCTTTTTAGAGAGAGAAAGCGGAAATTCAACAGCATCGCACAAGATATTTTACGCACCAGCGCCTCCGATCGCACATCCTCTGCCCCAAATTAGGGTTTCTTTATCATCTACCTTTAATCATATCCGTTGAAAAATATCTCTGCCTGGAAAACGGTTGTGGCGTTGGAGGTATTTTTTGACAGGGGAGAGGATTTGTGTGATTTTGCGTGC...

CDS

3 records

下载 CDS FASTA

LOC130999529
ATGCCTGCTACGTGGTCTGAATCTGTCGAGAAGGCTCCTACCGGTGGTGGTGTAGGGGCTACTTCTCATGCTTCTAGAAGTACTTATGTTCCGCCGCATCTTAGGAATAGGCCTCCTTCAGCCTCAGCAGACCCTCCTCCTCCCTCGGCTGCAGTTTCCTATGCTGGAACCTTGGTGGGAAATGAACCCCAGGGATATGGTGGTTCGGCAGTAGGTGGATTTCAGTCGTATGGTCCTAGAAATGATAGAAATGGAGGTGG...

Protein

3 records

下载 Protein FASTA

XP_057781061.1
MPATWSESVEKAPTGGGVGATSHASRSTYVPPHLRNRPPSASADPPPPSAAVSYAGTLVGNEPQGYGGSAVGGFQSYGPRNDRNGGGLSRGGGGGGSAWNNRNGGWDRGREREANPFQDDGVAEPEFAVQENSGINFDAYEDIPVETSGKDVPPPVNTFAEIDLGDALNMNIKRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISGIMKSGQSAQRQPRMPRMAFPLALILSPTRELSIQIHEEARKF...

XP_057781062.1
MPATWSESVEKAPTGGGVGATSHASRSTYVPPHLRNRPPSASADPPPPSAAVSYAGTLVGNEPQGYGGSAVGGFQSYGPRNDRNGGGLSRGGGGGGSAWNNRNGGWDRGREREANPFQDDGVAEPEFAVQENSGINFDAYEDIPVETSGKDVPPPVNTFAEIDLGDALNMNIKRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPIISGIMKSGQSAQRQPRMPRMAFPLALILSPTRELSIQIHEEARKF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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