当前解析结果
SmilChr08G004875| 统一新 Gene ID | SmilChr08G004875 |
|---|---|
| 名称 | SmilChr08G004875 |
| 描述 | uncharacterized SmilChr08G004875 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57869714 - 57872162 / - |
| NCBI Gene ID | LOC130999532 |
|---|---|
| GeneID | 130999532 |
| locus_tag | - |
| NCBI Name | LOC130999532 |
| 原始查询 | SmilChr08G004875 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0307900; species=rice; confidence=low |
| 产物 | hit=Os02g0307900; species=rice; confidence=low |
| Arabidopsis | AT1G51172 (AT1G51172)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:3767434] identity=26.7; qcov=0.372; evalue=1.97e-15; confidence=low |
| Rice | Os02g0307900- identity=28.5; qcov=0.355; evalue=8.74e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999532 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781066.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057781066.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057781066.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781066.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781066.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57870304 |
GCT |
G |
2bp_deletion | frameshift_variant | 1 | B18 |
Chr8:57870304 |
GCT |
G |
2bp_deletion | CDS_variant | 1 | B18 |
Chr8:57870464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:57870472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B29 |
Chr8:57870581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:57870586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B13,C39,C49 |
Chr8:57870587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C35 |
Chr8:57870607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr8:57870631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr8:57870638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B19,C1,C78 |
Chr8:57870652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B94,C60 |
Chr8:57870671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B30,C37 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。