当前解析结果
SmilChr08G004877| 统一新 Gene ID | SmilChr08G004877 |
|---|---|
| 名称 | SmilChr08G004877 |
| 描述 | uncharacterized SmilChr08G004877 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57878383 - 57883837 / - |
| NCBI Gene ID | LOC130998828 |
|---|---|
| GeneID | 130998828 |
| locus_tag | - |
| NCBI Name | LOC130998828 |
| 原始查询 | SmilChr08G004877 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=35.4; qcov=0.082; evalue=1.76e-10; confidence=weak |
| Rice | Os08g0202300- identity=31.1; qcov=0.211; evalue=1.41e-57; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998828 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780216.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057780216.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057780216.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780216.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780216.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57883114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:57883121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C24 |
Chr8:57883240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:57883258 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C24 |
Chr8:57883258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:57883259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:57883262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B131,C24,C3,C6 |
Chr8:57883273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B66,C79 |
Chr8:57883278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr8:57883284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr8:57883301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B104,B133,B77 |
Chr8:57883304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780216.1PF00078
RVT_1 781-940 aa
PF17919
RT_RNaseH_2 1004-1102 aa
PF17917
RT_RNaseH 1034-1131 aa
PF13456
RVT_3 1182-1300 aa
PF17921
Integrase_H2C2 1391-1447 aa
PF00665
rve 1466-1562 aa
PF31073
DUF8803 1685-1748 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780216.1 |
Pfam | PF00078 |
RVT_1 | Domain | 781 | 940 | 1.6e-33 | 117.0 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057780216.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 1004 | 1102 | 1.1e-23 | 83.8 | RNase H-like domain found in reverse transcriptase |
XP_057780216.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 1034 | 1131 | 1.5e-19 | 70.8 | RNase H-like domain found in reverse transcriptase |
XP_057780216.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1182 | 1300 | 6.4e-16 | 59.1 | Reverse transcriptase-like |
XP_057780216.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1391 | 1447 | 6e-09 | 36.6 | Integrase zinc binding domain |
XP_057780216.1 |
Pfam | PF00665 |
rve | Domain | 1466 | 1562 | 3e-17 | 63.5 | Integrase core domain |
XP_057780216.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1685 | 1748 | 2.9e-27 | 95.0 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。