Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004882

染色体: Chr08 坐标: 57908117-57910710 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004882
名称SmilChr08G004882
描述uncharacterized SmilChr08G004882
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57908117 - 57910710 / +

ID 对照

NCBI Gene IDLOC130998831
GeneID130998831
locus_tag-
NCBI NameLOC130998831
原始查询SmilChr08G004882

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:822107]; symbol=AT3G25160; hit=AT3G25160; species=arabidopsis; confidence=high
产物ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:822107]; symbol=AT3G25160; hit=AT3G25160; species=arabidopsis; confidence=high
ArabidopsisAT3G25160 (AT3G25160)
ER lumen protein retaining receptor family protein [Source:NCBI gene (formerly Entrezgene);Acc:822107]
identity=61.9; qcov=0.945; evalue=1.72e-113; confidence=high
RiceOs09g0534200 (OsGL1B)
-
identity=57; qcov=0.956; evalue=6.72e-106; confidence=high
GOGO:0006621 (protein retention in ER lumen); GO:0016020 (membrane); GO:0046923 (ER lumen protein retrieval receptor activity)
KEGG-
PfamPF00810 (ER_lumen_recept)
InterPro-
eggNOG-
NRGeneID:130998831

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057780219.1
2 Endoplasmic reticulum 内质网 0.60000 XP_057780219.1
3 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057780219.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057780219.1
5 Endoplasmic reticulum-golgi intermediate compartment Endoplasmic reticulum-golgi intermediate compartment 0.20000 XP_057780219.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57908137 G A EMS_canonical_SNV CDS_variant 1 C39
Chr8:57908197 C T EMS_canonical_SNV CDS_variant 1 C83
Chr8:57908206 G A EMS_canonical_SNV CDS_variant 2 B77,B97
Chr8:57908237 C T EMS_canonical_SNV CDS_variant 3 B1,B66,B77
Chr8:57909078 C T EMS_canonical_SNV CDS_variant 4 B105,B124,C4,C5
Chr8:57909081 C T EMS_canonical_SNV CDS_variant 2 A19,D1
Chr8:57909086 C T EMS_canonical_SNV CDS_variant 4 B103,B19,B6,C6
Chr8:57909144 C T EMS_canonical_SNV CDS_variant 2 C32,D10
Chr8:57909145 G A EMS_canonical_SNV CDS_variant 1 A18
Chr8:57909554 C T EMS_canonical_SNV CDS_variant 4 A21,B108,B119,C3
Chr8:57909766 T TA 1bp_insertion frameshift_variant 2 B103,B19
Chr8:57909766 T TA 1bp_insertion CDS_variant 2 B103,B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057780219.1
275 aa
N
1
138
275
ER_lumen_recept
C
PF00810 ER_lumen_recept 68-210 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057780219.1 Pfam PF00810 ER_lumen_recept Repeat 68 210 3.8e-42 145.2 ER lumen protein retaining receptor

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057924236.1
ATGTGGACGAGGATTACGGCGCCGTTTTACAAGATTCTTGCATGGCTGCGGCGGCGGTCAACGATAGTCAAGGCCCTCCTCGCGGCGGCGGCGGCGCTCTGCGCGGTGGCGGCGCTGAAACTGTCCCATTTCTTCGTCGCGTCTGAGGCGATCCATTTCCTTGGGATTTTGGTGTTGATTTATAAGCTCACCACTCTCAAAACGTGCTCCGGGCTCTCCTTGAAGGCACAAGAGCTTACAGCTACATTCTTGACATCAAG...

CDS

1 records

下载 CDS FASTA
LOC130998831
ATGTGGACGAGGATTACGGCGCCGTTTTACAAGATTCTTGCATGGCTGCGGCGGCGGTCAACGATAGTCAAGGCCCTCCTCGCGGCGGCGGCGGCGCTCTGCGCGGTGGCGGCGCTGAAACTGTCCCATTTCTTCGTCGCGTCTGAGGCGATCCATTTCCTTGGGATTTTGGTGTTGATTTATAAGCTCACCACTCTCAAAACGTGCTCCGGGCTCTCCTTGAAGGCACAAGAGCTTACAGCTACATTCTTGACATCAAG...

Protein

1 records

下载 Protein FASTA
XP_057780219.1
MWTRITAPFYKILAWLRRRSTIVKALLAAAAALCAVAALKLSHFFVASEAIHFLGILVLIYKLTTLKTCSGLSLKAQELTATFLTSRLCCSFFMERDIHTVLDCLTLVSTLWIVYKMRFELKSTYISKLDNMPLYYVIVPCAILAMLVHPRTYQGRPVRMLWAFAVYLESISVLPQLKMIQNAKIIEPFTAHYVFALGIARFLGCAHWIIKVYKSSGRYLYLVGAGYIWFPMVLLAEIVQTFILADFCYYYIKGLMDGRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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