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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004885

染色体: Chr08 坐标: 57920630-57923046 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004885
名称SmilChr08G004885
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向57920630 - 57923046 / -

ID 对照

NCBI Gene IDLOC130999537
GeneID130999537
locus_tag-
NCBI NameLOC130999537
原始查询SmilChr08G004885

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=37.7; qcov=0.877; evalue=1.61e-137; confidence=medium
RiceOs08g0107800
-
identity=30.5; qcov=0.928; evalue=3.42e-93; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999537

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057781070.1
2 Nucleus 细胞核 0.00000 XP_057781070.1
3 Chromosome 染色体 0.00000 XP_057781070.1
4 Centromere 着丝粒 0.00000 XP_057781070.1
5 Chromatin 染色质 0.00000 XP_057781070.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:57920747 C T EMS_canonical_SNV CDS_variant 4 B140,B2,B61,D4
Chr8:57920773 C T EMS_canonical_SNV CDS_variant 3 B1,B62,C70
Chr8:57920817 G A EMS_canonical_SNV CDS_variant 1 C69
Chr8:57921011 C T EMS_canonical_SNV CDS_variant 3 B130,B66,C75
Chr8:57921056 C T EMS_canonical_SNV CDS_variant 2 B124,C83
Chr8:57921131 TGC T 2bp_deletion frameshift_variant 2 C28,C38
Chr8:57921131 TGC T 2bp_deletion CDS_variant 2 C28,C38
Chr8:57921168 C T EMS_canonical_SNV CDS_variant 1 A3
Chr8:57921254 G A EMS_canonical_SNV CDS_variant 4 B108,B140,B61,D4
Chr8:57921297 G A EMS_canonical_SNV CDS_variant 1 C45
Chr8:57921364 G A EMS_canonical_SNV CDS_variant 1 C73
Chr8:57921403 C T EMS_canonical_SNV CDS_variant 5 A24,B49,C37,C60,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781070.1
608 aa
N
1
304
608
PPR_3
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
PPR_3
PPR_1
TPR_24
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR_2
TPR_24
PPR_1
PPR_2
PPR
PPR_long
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
C
PF13812 PPR_3 68-108 aa PF13041 PPR_2 79-128 aa PF01535 PPR 84-110 aa PF13812 PPR_3 139-197 aa PF13041 PPR_2 149-199 aa PF01535 PPR 152-178 aa PF01535 PPR 189-215 aa PF13812 PPR_3 217-267 aa PF12854 PPR_1 219-248 aa PF23276 TPR_24 219-314 aa PF13041 PPR_2 222-271 aa PF01535 PPR 226-255 aa PF12854 PPR_1 253-285 aa PF13041 PPR_2 257-303 aa PF01535 PPR 260-288 aa PF12854 PPR_1 290-321 aa PF13041 PPR_2 292-329 aa PF01535 PPR 295-323 aa PF13812 PPR_3 319-374 aa PF12854 PPR_1 325-352 aa PF13041 PPR_2 327-375 aa PF01535 PPR 330-360 aa PF12854 PPR_1 359-386 aa PF01535 PPR 365-387 aa PF12854 PPR_1 395-426 aa PF13812 PPR_3 395-442 aa PF13041 PPR_2 397-445 aa PF01535 PPR 400-427 aa PF12854 PPR_1 430-461 aa PF01535 PPR 436-465 aa PF13041 PPR_2 436-481 aa PF23276 TPR_24 437-498 aa PF12854 PPR_1 463-494 aa PF13041 PPR_2 467-515 aa PF01535 PPR 470-499 aa PF17177 PPR_long 483-600 aa PF23276 TPR_24 489-586 aa PF13812 PPR_3 491-546 aa PF12854 PPR_1 498-530 aa PF01535 PPR 505-535 aa PF13041 PPR_2 510-551 aa PF12854 PPR_1 533-565 aa PF01535 PPR 540-570 aa PF13041 PPR_2 540-581 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781070.1 Pfam PF13812 PPR_3 Repeat 68 108 8.2e-70 231.5 Pentatricopeptide repeat domain
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 79 128 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 84 110 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF13812 PPR_3 Repeat 139 197 8.2e-70 231.5 Pentatricopeptide repeat domain
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 149 199 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 152 178 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF01535 PPR Repeat 189 215 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF13812 PPR_3 Repeat 217 267 8.2e-70 231.5 Pentatricopeptide repeat domain
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 219 248 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF23276 TPR_24 Repeat 219 314 1.4e-35 122.8 Pentatricopeptide repeat-containing protein
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 222 271 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 226 255 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 253 285 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 257 303 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 260 288 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 290 321 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 292 329 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 295 323 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF13812 PPR_3 Repeat 319 374 8.2e-70 231.5 Pentatricopeptide repeat domain
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 325 352 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 327 375 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 330 360 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 359 386 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF01535 PPR Repeat 365 387 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 395 426 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF13812 PPR_3 Repeat 395 442 8.2e-70 231.5 Pentatricopeptide repeat domain
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 397 445 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 400 427 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 430 461 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF01535 PPR Repeat 436 465 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 436 481 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF23276 TPR_24 Repeat 437 498 1.4e-35 122.8 Pentatricopeptide repeat-containing protein
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 463 494 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 467 515 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF01535 PPR Repeat 470 499 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF17177 PPR_long Repeat 483 600 9.3e-28 97.8 Pentacotripeptide-repeat region of PRORP
XP_057781070.1 Pfam PF23276 TPR_24 Repeat 489 586 1.4e-35 122.8 Pentatricopeptide repeat-containing protein
XP_057781070.1 Pfam PF13812 PPR_3 Repeat 491 546 8.2e-70 231.5 Pentatricopeptide repeat domain
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 498 530 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF01535 PPR Repeat 505 535 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 510 551 7.4e-139 452.5 PPR repeat family
XP_057781070.1 Pfam PF12854 PPR_1 Repeat 533 565 2.2e-115 376.7 PPR repeat
XP_057781070.1 Pfam PF01535 PPR Repeat 540 570 8.2e-90 289.7 PPR repeat
XP_057781070.1 Pfam PF13041 PPR_2 Repeat 540 581 7.4e-139 452.5 PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925087.1
TTTTACCAACAATTCTCATTTTTCAGCAAAGATGAAAATATATACACTGATTTTAAGAAATGAAAGCACAATGATACTACAATTTTAACACAAGGAAGGTACAACTTATTTTTGATAAAATAAAGTTAGAAAGACTGATACACGAATCAGTGTAGAAACTAGAAAACATAGGACATAATTTTTTTTTTTTTTGAATTAGATAGGACATAAATAGTTGATTGTACAATATTTATAGTTTTGGCATAAGTTGCTTAGCTTAA...

CDS

1 records

下载 CDS FASTA
LOC130999537
ATGAGGCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCGTTCAATTCCTCCACTTCCCCACATTATCAATCATTTCTTGTAAAACCCAGATTCAATTTTGATAATGTCAGCTGCCAAATGAGACACTTATCCTCCTATCCCAGATTCGATTTCGGATCTATGCGTGATGCGGATGAAGCCATCGCTCTATTTCGGGAGATGATGAGAACGGAGCCGCTTCCTTCTGTTATTGATTTCACGAAATT...

Protein

1 records

下载 Protein FASTA
XP_057781070.1
MRRNHAAMILGRIISNSSFNSSTSPHYQSFLVKPRFNFDNVSCQMRHLSSYPRFDFGSMRDADEAIALFREMMRTEPLPSVIDFTKLLSAVVKMKQYSLALHLFDEMLQRNAPVDHYTLSIAIDCYCRLKRPDFGFAILGNFFKLGFEPTVVTFTTLIKGLLLVGRIPEAAKVLKKLLVFQLCEPNEHTYSTMINGICKAVGSLEAIDLLCLLEKEKGNCKPNAYAYNAVIDGLCKDGKVDDALQLFSTLGDKGISPTVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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