Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004894`

染色体: Chr08 坐标: 57981601-57982416 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004894`
名称	SmilChr08G004894
描述	uncharacterized SmilChr08G004894
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57981601 - 57982416 / `-`

ID 对照

NCBI Gene ID	`LOC130998832`
GeneID	`130998832`
locus_tag	`-`
NCBI Name	`LOC130998832`
原始查询	`SmilChr08G004894`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822094]; symbol=AT3G25030; hit=AT3G25030; species=arabidopsis; confidence=low
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822094]; symbol=AT3G25030; hit=AT3G25030; species=arabidopsis; confidence=low
Arabidopsis	`AT3G25030` (AT3G25030) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822094] identity=34.2; qcov=0.959; evalue=1.4e-35; confidence=low
Rice	`Os01g0917900` - identity=41.5; qcov=0.435; evalue=3.52e-26; confidence=low
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:130998832

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057780221.1`
2	Nucleus	细胞核	0.40000	`XP_057780221.1`
3	Cytosol	细胞质基质	0.40000	`XP_057780221.1`
4	Cytoplasm	细胞质	0.20000	`XP_057780221.1`
5	Chromosome	染色体	0.00000	`XP_057780221.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57981685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C63
`Chr8:57981788`	`TC`	`T`	1bp_deletion	frameshift_variant	9	A24,B46,C12,C2,C45,C47,C5,C73,C86
`Chr8:57981791`	`TCC`	`T`	2bp_deletion	frameshift_variant	9	A24,B46,C12,C2,C45,C47,C5,C73,C86
`Chr8:57981794`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B109,B115,B20,B69,C56
`Chr8:57981794`	`TC`	`T`	1bp_deletion	CDS_variant	5	B109,B115,B20,B69,C56
`Chr8:57981797`	`TCG`	`T`	2bp_deletion	frameshift_variant	5	B109,B115,B20,B69,C56
`Chr8:57981797`	`TCG`	`T`	2bp_deletion	CDS_variant	5	B109,B115,B20,B69,C56
`Chr8:57982384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B119,B124,C5,C71,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780221.1

271 aa

136

271

zf-C3HC4_3

zf-C3HC4

zf-C3HC4_2

PF13920 zf-C3HC4_3 222-264 aa PF00097 zf-C3HC4 223-260 aa PF13923 zf-C3HC4_2 223-260 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780221.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	222	264	1.8e-09	38.0	Zinc finger, C3HC4 type (RING finger)
`XP_057780221.1`	Pfam	`PF00097`	zf-C3HC4	Domain	223	260	1.9e-07	31.6	Zinc finger, C3HC4 type (RING finger)
`XP_057780221.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	223	260	4.9e-07	30.2	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924238.1
ATGGAACCCGACGGCGGCGGCCGAAGCGGCGGCGACGGAAAATTCTCCCGCGCCGTATCCACCCGCACCTTGACGGACGTCATCGACGACGAAGGCGCCGACGGCAGCGCAAAGGAGGAGCTGAGGGGGTGGAAGCATTTCAAGGAGAAGATCCGGAGCCACGGCCGCCGCGGCAGCGGCGGCGGCGGCTCCGCCTGGACGTCGAGCGTGGCCGTCCCGGCCTCCGACGTCCCCATCCAGACGAGCAAGAAGCGCGTGAT...

CDS

1 records

下载 CDS FASTA

LOC130998832
ATGGAACCCGACGGCGGCGGCCGAAGCGGCGGCGACGGAAAATTCTCCCGCGCCGTATCCACCCGCACCTTGACGGACGTCATCGACGACGAAGGCGCCGACGGCAGCGCAAAGGAGGAGCTGAGGGGGTGGAAGCATTTCAAGGAGAAGATCCGGAGCCACGGCCGCCGCGGCAGCGGCGGCGGCGGCTCCGCCTGGACGTCGAGCGTGGCCGTCCCGGCCTCCGACGTCCCCATCCAGACGAGCAAGAAGCGCGTGAT...

Protein

1 records

下载 Protein FASTA

XP_057780221.1
MEPDGGGRSGGDGKFSRAVSTRTLTDVIDDEGADGSAKEELRGWKHFKEKIRSHGRRGSGGGGSAWTSSVAVPASDVPIQTSKKRVMFRHASGRVSAAPESDPGMQPDIAAVSDFRSSSLRRNSSGGRSERSARFDSDPSPLRRLQEEEAEEERAADAAEEGAGGGDEGAGAGGGAGAGEEQPVQKMSLLSLLAEEDDEYGMDEEDEEEEEEEEEGGSANISCSICMVRHKGAAFEPCGHSFCRLCSREMWVQGGNCPLC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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