Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004895`

染色体: Chr08 坐标: 57983465-57996387 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004895`
名称	SmilChr08G004895
描述	chromatin modification-related protein EAF1 B-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57983465 - 57996387 / `+`

ID 对照

NCBI Gene ID	`LOC130999548`
GeneID	`130999548`
locus_tag	`-`
NCBI Name	`LOC130999548`
原始查询	`SmilChr08G004895`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chromatin modification-related protein EAF1 B-like
产物	chromatin modification-related protein EAF1 B-like
Arabidopsis	`AT3G24880` (AT3G24880) Helicase/SANT-associated, DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:822086] identity=46; qcov=1.03; evalue=0; confidence=high
Rice	`Os08g0177300` - identity=45.2; qcov=0.49; evalue=1.29e-165; confidence=medium
GO	GO:0035267 (NuA4 histone acetyltransferase complex)
KEGG	-
Pfam	PF07529 (HSA); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:130999548

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781085.1`
2	Chromosome	染色体	0.00000	`XP_057781085.1`
3	Centromere	着丝粒	0.00000	`XP_057781085.1`
4	Chromatin	染色质	0.00000	`XP_057781085.1`
5	Telomere	端粒	0.00000	`XP_057781085.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57985398`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B36
`Chr8:57985398`	`TG`	`T`	1bp_deletion	CDS_variant	1	B36
`Chr8:57985728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B88,C76
`Chr8:57985909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,D9
`Chr8:57985957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B55,B63
`Chr8:57986051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B132,B32,B90,B92,D1
`Chr8:57986096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr8:57986285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr8:57986288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B21,B47,B55
`Chr8:57986391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C35,D4
`Chr8:57986422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr8:57986427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781085.1

1944 aa

972

1944

HSA

Myb_DNA-bind_6

PF07529 HSA 602-636 aa PF13921 Myb_DNA-bind_6 1071-1124 aa

XP_057781086.1

1948 aa

974

1948

HSA

Myb_DNA-bind_6

PF07529 HSA 602-636 aa PF13921 Myb_DNA-bind_6 1071-1124 aa

XP_057781087.1

1421 aa

710

1421

HSA

Myb_DNA-bind_6

PF07529 HSA 602-636 aa PF13921 Myb_DNA-bind_6 1071-1124 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781085.1`	Pfam	`PF07529`	HSA	Family	602	636	1.4e-09	38.8	HSA domain
`XP_057781085.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	1071	1124	7.9e-06	26.7	Myb-like DNA-binding domain
`XP_057781086.1`	Pfam	`PF07529`	HSA	Family	602	636	1.4e-09	38.8	HSA domain
`XP_057781086.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	1071	1124	8.8e-06	26.5	Myb-like DNA-binding domain
`XP_057781087.1`	Pfam	`PF07529`	HSA	Family	602	636	2e-10	41.5	HSA domain
`XP_057781087.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	1071	1124	8.4e-06	26.6	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925103.1
ATATTGGAAGGCATTTTTAGAGAGAGAAAGTTTCGGGGAACCAACGAGCACGAAGGGGGACGAGCCTGCAGCATCATTTCAAATCAAAATCACACGCAGTTACACGCACTGACCTATACATACGCGTATTCGTATGTATACGTTCATCTTCGTTGCCATGCTGTAGCGGGAATGCTCTCATAGAGTCGGGTGCTGTAGGGCAAAATATGCAATCATTGCTTTGAGTTGAGGTACCTTGTGCTATCAGAAGCAAAACCCTA...

XM_057925102.1
AGGCATTTTTAGAGAGAGAAAGTTTCGGGGAACCAACGAGCACGAAGGGGGACGAGCCTGCAGCATCATTTCAAATCAAAATCACACGCAGTTACACGCACTGACCTATACATACGCGTATTCGTATGTATACGTTCATCTTCGTTGCCATGCTGTAGCGGGAATGCTCTCATAGAGTCGGGTGCTGTAGGGCAAAATATGCAATCATTGCTTTGAGTTGAGGTACCTTGTGCTATCAGAAGCAAAACCCTAGGAGCTGA...

CDS

3 records

下载 CDS FASTA

LOC130999548
ATGCATGGATGCAACTCACCGTCTGTTCCCTTAGTAAATGCCGAAGTTGAGTCTATGGGAGGAGTTGTGGAAGGCGGAGTTGGTATTGCTCACAAAACTTCTCCCAGACGAGCAGCAATTGAAAGGATCCAAGGAGAGCTCAGGCAAGAGTATAATGTTCGGGATAAAACAAAAAGAGAATTGGAATTTCTTGAAAAAGGTGGAAATCCCTTAGATTTACTTAAGCCTGGAGATGCTACTTCTGTTAGTGTCCAGTCAAC...

Protein

3 records

下载 Protein FASTA

XP_057781085.1
MHGCNSPSVPLVNAEVESMGGVVEGGVGIAHKTSPRRAAIERIQGELRQEYNVRDKTKRELEFLEKGGNPLDLLKPGDATSVSVQSTSFTNQHQDHFVTSEAKGSFAFTASPHGDSVESSGRLGANPCEPNSADNLMLFDGEHECSEGDKISLHPSRSKIVLPEKLSQMDGSHRTREHGESAAFSVPRKAYKRRNRSRPNRDGIRLSSVDVNTTHGSDGSSLPSRHGKELKGQISDAENRNISINCDSKPICAKDGGKTG...

XP_057781086.1
MHGCNSPSVPLVNAEVESMGGVVEGGVGIAHKTSPRRAAIERIQGELRQEYNVRDKTKRELEFLEKGGNPLDLLKPGDATSVSVQSTSFTNQHQDHFVTSEAKGSFAFTASPHGDSVESSGRLGANPCEPNSADNLMLFDGEHECSEGDKISLHPSRSKIVLPEKLSQMDGSHRTREHGESAAFSVPRKAYKRRNRSRPNRDGIRLSSVDVNTTHGSDGSSLPSRHGKELKGQISDAENRNISINCDSKPICAKDGGKTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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