Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004928`

染色体: Chr08 坐标: 58183688-58186724 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004928`
名称	SmilChr08G004928
描述	5'-adenylylsulfate reductase-like 5
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	58183688 - 58186724 / `+`

ID 对照

NCBI Gene ID	`LOC130999578`
GeneID	`130999578`
locus_tag	`-`
NCBI Name	`LOC130999578`
原始查询	`SmilChr08G004928`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5'-adenylylsulfate reductase-like 5
产物	5'-adenylylsulfate reductase-like 5
Arabidopsis	`AT3G03860` (APRL5) APR-like 5 [Source:NCBI gene (formerly Entrezgene);Acc:821101] identity=52.2; qcov=0.987; evalue=1.02e-78; confidence=high
Rice	`Os03g0806500` (OsAPRL5) - identity=47.3; qcov=0.881; evalue=1.27e-59; confidence=high
GO	-
KEGG	-
Pfam	PF00085 (Thioredoxin); PF27914 (APRL7_C)
InterPro	-
eggNOG	-
NR	GeneID:130999578

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057781128.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057781129.1`
3	Nucleus membrane	核膜	0.20000	`XP_057781129.1`
4	Nucleus	细胞核	0.00000	`XP_057781128.1`
5	Chromosome	染色体	0.00000	`XP_057781128.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:58184012`	`A`	`AAT`	2bp_insertion	frameshift_variant	69	A1,A13,A2,A24,A3,B10,B100,B106,B11,B111,B112,B114,B122,B123,B128,B129,B132,B137,B14,B140,B16,B17,B18,B2,B25,B28,B29,B3,B31,B41,B46,B58,B59,B63,B67,B68,B72,B8,B84,B88,B89,B95,C11,C14,C23,C26,C31,C32,C38,C40,C44,C50,C60,C62,C64,C65,C66,C68,C69,C72,C73,C77,C8,C81,C85,D1,D10,D11,D2
`Chr8:58184146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,D4
`Chr8:58184172`	`G`	`GGT`	2bp_insertion	frameshift_variant	8	A2,B132,B14,B72,C32,C38,C62,C8
`Chr8:58185123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,C52,C76,D8
`Chr8:58185150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,C52,C76,D8
`Chr8:58185671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr8:58185991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr8:58186125`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B112
`Chr8:58186125`	`A`	`AT`	1bp_insertion	CDS_variant	1	B112
`Chr8:58186133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B127,B4,B51,C63
`Chr8:58186268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:58186312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781128.1

307 aa

154

307

Thioredoxin

APRL7_C

PF00085 Thioredoxin 62-162 aa PF27914 APRL7_C 193-265 aa

XP_057781129.1

235 aa

118

235

Thioredoxin

APRL7_C

PF00085 Thioredoxin 4-90 aa PF27914 APRL7_C 121-193 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781128.1`	Pfam	`PF00085`	Thioredoxin	Domain	62	162	2.2e-10	41.2	Thioredoxin
`XP_057781128.1`	Pfam	`PF27914`	APRL7_C	Domain	193	265	2.4e-30	105.3	5'-adenylylsulfate reductase 7, C-terminal domain
`XP_057781129.1`	Pfam	`PF00085`	Thioredoxin	Domain	4	90	5e-09	36.8	Thioredoxin
`XP_057781129.1`	Pfam	`PF27914`	APRL7_C	Domain	121	193	1.3e-30	106.1	5'-adenylylsulfate reductase 7, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925145.1
TGATAGAAACAATCATCTCCCTTAACAGCAAGCGCGTAATTACAATTATAATAATTAATCACAACAAGATAAATCAAATAAATCGATAAAAAAATATTATTCAGGTCCACCAACGAGAACCCAAGTAGGAAAAAAAATATATAGGAAATTTAATTTTATCAAAAAGAAAAAAAGGTAGAAGAAGAAGAAGAAGGAAGAGATTCGTCAATCCTTAGATTTTTGGGGGCTCATCGTTCGCAGCTTAATCTCTAAGGTTTTCT...

XM_057925146.1
AATATTATTCAGGTCCACCAACGAGAACCCAAGTAGGAAAAAAAATATATAGGAAATTTAATTTTATCAAAAAGAAAAAAAGGTAGAAGAAGAAGAAGAAGGAAGAGATTCGTCAATCCTTAGATTTTTGGGGGCTCATCGTTCGCAGCTTAATCTCTAAGCGACGTCGTTGCGTTCGGATTCTTCCTCGTCGTCGTCTGTTTGTCAGCTGGATTTCGTAACATTTCTTCACGATCTCAATTCTCAGTGCCCCTTTGCCG...

CDS

2 records

下载 CDS FASTA

LOC130999578
ATGGATATTTCGATGGGAAAATGCGTATTTATGTTGATGGTGGTGTGTGTGTTGACGGAATCAGCGACGTCGTTGCGTTCGGATTCTTCCTCGTCGTCGTCTGTTTGTCAGCTGGATTTCGTAACATTTCTTCACGATCTCAATTCTCAGTGCCCCTTTGCCGACCCGTTCCCTTCTTCGCCAATTCAGGTGAATGGAGAAGCATTTGATAAAGCTATGGCCTCCATTCGGAAGAATGAATATATGGCCGTTTTGTTTTA...

LOC130999578
ATGGCCTCCATTCGGAAGAATGAATATATGGCCGTTTTGTTTTATGCCTCATGGTGTCCTTTCTCAAGCATCTTCAAGCCTAAATTTTCTACTCTCAGTTCCATGTATCCTCAGATCAAACATGTGATGGTCGAACAATCTTCAGCCATGCCTAGTGTTTTCTCTAGATATGGTATTCATAGTGTGCCCTCACTGCTGATAGTGAATCAGACAACACGAATTAGGTATCAGGGTAGCAAAGATCTCCAGTCCCTTGTGAG...

Protein

2 records

下载 Protein FASTA

XP_057781128.1
MDISMGKCVFMLMVVCVLTESATSLRSDSSSSSSVCQLDFVTFLHDLNSQCPFADPFPSSPIQVNGEAFDKAMASIRKNEYMAVLFYASWCPFSSIFKPKFSTLSSMYPQIKHVMVEQSSAMPSVFSRYGIHSVPSLLIVNQTTRIRYQGSKDLQSLVSFYKRTTGLDHMADMAEETHRNEEAFRVWDSASLKEALYREPYLVLSLVFVISRAFLYFFPEIASDLSALWLACMPHLNLGIFGESRQLLGHALQLIDVRRI...

XP_057781129.1
MASIRKNEYMAVLFYASWCPFSSIFKPKFSTLSSMYPQIKHVMVEQSSAMPSVFSRYGIHSVPSLLIVNQTTRIRYQGSKDLQSLVSFYKRTTGLDHMADMAEETHRNEEAFRVWDSASLKEALYREPYLVLSLVFVISRAFLYFFPEIASDLSALWLACMPHLNLGIFGESRQLLGHALQLIDVRRILSKLKICKTRNFHERARNARVWASSLASVSLGETSSSRVLTSRGFEN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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