Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004934`

染色体: Chr08 坐标: 58251434-58258182 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004934`
名称	SmilChr08G004934
描述	lysine--tRNA ligase, chloroplastic/mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	58251434 - 58258182 / `+`

ID 对照

NCBI Gene ID	`LOC130999587`
GeneID	`130999587`
locus_tag	`-`
NCBI Name	`LOC130999587`
原始查询	`SmilChr08G004934`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	lysine--tRNA ligase, chloroplastic/mitochondrial
产物	lysine--tRNA ligase%2C chloroplastic/mitochondrial
Arabidopsis	`AT3G13490` (OVA5) Lysyl-tRNA synthetase, class II [Source:NCBI gene (formerly Entrezgene);Acc:820551] identity=78.8; qcov=0.885; evalue=0; confidence=high
Rice	`Os02g0623500` - identity=75.7; qcov=0.876; evalue=0; confidence=high
GO	GO:0000049 (tRNA binding); GO:0004824 (lysine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0006430 (lysyl-tRNA aminoacylation)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00152 (tRNA-synt_2); PF01336 (tRNA_anti-codon)
InterPro	-
eggNOG	-
NR	GeneID:130999587

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057781137.1`
2	Chloroplast	叶绿体	1.00000	`XP_057781137.1`
3	Nucleus	细胞核	0.00000	`XP_057781137.1`
4	Chromosome	染色体	0.00000	`XP_057781137.1`
5	Centromere	着丝粒	0.00000	`XP_057781137.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:58253193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:58253225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:58253327`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr8:58253333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B78,C24
`Chr8:58255187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B40,B5,C14,C40
`Chr8:58256533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B41
`Chr8:58256742`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B35,B41
`Chr8:58257029`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr8:58257276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr8:58257470`	`G`	`GC`	1bp_insertion	frameshift_variant	1	C6
`Chr8:58257470`	`G`	`GC`	1bp_insertion	CDS_variant	1	C6
`Chr8:58257631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781137.1

603 aa

302

603

tRNA_anti-codon

tRNA-synt_2

PF01336 tRNA_anti-codon 139-217 aa PF00152 tRNA-synt_2 235-597 aa

XP_057781138.1

591 aa

296

591

tRNA_anti-codon

tRNA-synt_2

PF01336 tRNA_anti-codon 127-205 aa PF00152 tRNA-synt_2 223-585 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781137.1`	Pfam	`PF01336`	tRNA_anti-codon	Domain	139	217	2.5e-17	63.3	OB-fold nucleic acid binding domain
`XP_057781137.1`	Pfam	`PF00152`	tRNA-synt_2	Domain	235	597	8.4e-84	282.0	tRNA synthetases class II (D, K and N)
`XP_057781138.1`	Pfam	`PF01336`	tRNA_anti-codon	Domain	127	205	2.3e-17	63.4	OB-fold nucleic acid binding domain
`XP_057781138.1`	Pfam	`PF00152`	tRNA-synt_2	Domain	223	585	7.9e-84	282.0	tRNA synthetases class II (D, K and N)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925154.1
AATTTCTTTATTTATTTATGTAATTTATATATATATATATATATATATATATATATATATATATATGGCCTATATCCATATCATATGTTTCCCTTCACATCCAAATAATTTTAAAACAAGCAAAAATCCTATTTTCCATTCACATTTATAAAATAATTAACTAGAAAAGCTTCAGAAAATTCCACACTCAATCTAGTAATTCACTAAGCGTTAGATACATTCATTTGAATCAATTCTCCCACAAAAACAACAACGGAAAA...

XM_057925155.1
TTTAATTGCAACATCAAAGATTAAAAACTTCGCAGTAAATGATGAGAAAAATCCATATGAAAAAGGAAGCAGAAGGAGTTTATAAACATACCTTAAACACACCCAATGTTTTCTTTCATTCTTTTAACTATTAACTTTTGCTTGACATTTCGAAATATATTTAATACATTTATCGAGCTACTAATTAATAATTATATTTACTTTATGTATCAATAATTCAAGTTTTATGAATAGCAAATATAAACAACCACACGACATTA...

CDS

2 records

下载 CDS FASTA

LOC130999587
ATGAGAGAAGCAGCGGAGGAAGGCGAAGCATCGAAAATGGAGGGCGCCCTGCACCCAATGAGACTGAGGCAGCTGCTCCACTTCGCCGCCTTTCCCAAACTCAACAAAACCCACTTCATCTTTAGGAATGCCCGACCCGTTTCCACTACCCGCTGCTCCTCCTCTTCTTCTTCTTCTTCGCCTGCCGCCGCCGCCGTCGCTGGTGGTCGCAACCGCAGGCCTTCTTCGTCTCAAACTAATACGTCCGACAGAGAGGCTAT...

LOC130999587
ATGGAGGGCGCCCTGCACCCAATGAGACTGAGGCAGCTGCTCCACTTCGCCGCCTTTCCCAAACTCAACAAAACCCACTTCATCTTTAGGAATGCCCGACCCGTTTCCACTACCCGCTGCTCCTCCTCTTCTTCTTCTTCTTCGCCTGCCGCCGCCGCCGTCGCTGGTGGTCGCAACCGCAGGCCTTCTTCGTCTCAAACTAATACGTCCGACAGAGAGGCTATTCGTGCAATTCGAATTAAAAAGGTGGAAGAGCTGAG...

Protein

2 records

下载 Protein FASTA

XP_057781137.1
MREAAEEGEASKMEGALHPMRLRQLLHFAAFPKLNKTHFIFRNARPVSTTRCSSSSSSSSPAAAAVAGGRNRRPSSSQTNTSDREAIRAIRIKKVEELRSKGLDAYAYTWRRTHAANQLQEIYRDLGNGEEAASESDRVSISGRIVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFEHLKTLVDIGDILGAEGSIKRTEKGELSVCVTSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRNRAK...

XP_057781138.1
MEGALHPMRLRQLLHFAAFPKLNKTHFIFRNARPVSTTRCSSSSSSSSPAAAAVAGGRNRRPSSSQTNTSDREAIRAIRIKKVEELRSKGLDAYAYTWRRTHAANQLQEIYRDLGNGEEAASESDRVSISGRIVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFEHLKTLVDIGDILGAEGSIKRTEKGELSVCVTSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRNRAKIISEIRKTVESA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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