Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004957`

染色体: Chr08 坐标: 58411847-58413816 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004957`
名称	SmilChr08G004957
描述	L-ascorbate oxidase homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	58411847 - 58413816 / `-`

ID 对照

NCBI Gene ID	`LOC130999596`
GeneID	`130999596`
locus_tag	`-`
NCBI Name	`LOC130999596`
原始查询	`SmilChr08G004957`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	L-ascorbate oxidase homolog
产物	L-ascorbate oxidase homolog
Arabidopsis	`AT1G55570` (sks12) SKU5 similar 12 [Source:NCBI gene (formerly Entrezgene);Acc:842006] identity=65.6; qcov=0.986; evalue=0; confidence=high
Rice	`Os01g0816700` - identity=62.7; qcov=0.953; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0016491 (oxidoreductase activity)
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3)
InterPro	-
eggNOG	-
NR	GeneID:130999596

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057781152.1`
2	Nucleus	细胞核	0.00000	`XP_057781152.1`
3	Chromosome	染色体	0.00000	`XP_057781152.1`
4	Centromere	着丝粒	0.00000	`XP_057781152.1`
5	Chromatin	染色质	0.00000	`XP_057781152.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:58412232`	`C`	`CCA`	2bp_insertion	frameshift_variant	137	A1,A14,A15,A18,A19,A2,A21,A22,A23,A25,A3,A7,A9,B1,B10,B100,B101,B104,B109,B11,B110,B115,B117,B119,B12,B120,B121,B124,B125,B127,B131,B132,B133,B135,B137,B14,B140,B19,B20,B21,B22,B27,B3,B30,B31,B32,B33,B34,B37,B39,B4,B40,B41,B42,B44,B46,B47,B49,B5,B50,B53,B54,B56,B6,B63,B65,B66,B67,B7,B75,B78,B79,B8,B81,B83,B84,B86,B87,B88,B94,B95,B96,B97,B98,C10,C12,C13,C15,C16,C17,C18,C19,C23,C24,C25,C26,C28,C29,C3,C30,C31,C32,C35,C36,C40,C43,C44,C45,C46,C48,C5,C53,C56,C59,C61,C63,C64,C65,C66,C68,C69,C70,C71,C73,C75,C77,C79,C8,C80,C83,C85,C87,C9,D1,D11,D3,D6
`Chr8:58412233`	`TTG`	`T`	2bp_deletion	frameshift_variant	137	A1,A14,A15,A18,A19,A2,A21,A22,A23,A25,A3,A7,A9,B1,B10,B100,B101,B104,B109,B11,B110,B115,B117,B119,B12,B120,B121,B124,B125,B127,B131,B132,B133,B135,B137,B14,B140,B19,B20,B21,B22,B24,B27,B3,B30,B31,B32,B33,B34,B37,B39,B4,B40,B41,B42,B44,B46,B47,B49,B5,B50,B53,B54,B56,B6,B63,B66,B67,B7,B75,B78,B79,B8,B81,B83,B84,B86,B87,B88,B94,B95,B96,B97,B98,C10,C12,C13,C15,C16,C17,C18,C19,C23,C24,C25,C26,C28,C29,C3,C30,C31,C32,C35,C36,C40,C43,C44,C45,C46,C48,C5,C53,C56,C59,C61,C63,C64,C65,C66,C68,C69,C70,C71,C73,C75,C77,C79,C8,C80,C83,C85,C87,C9,D1,D11,D3,D6
`Chr8:58412268`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A7
`Chr8:58412268`	`AC`	`A`	1bp_deletion	CDS_variant	1	A7
`Chr8:58412272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr8:58412327`	`A`	`ATG`	2bp_insertion	frameshift_variant	97	A1,A13,A14,A18,A2,A21,A22,A23,A25,A7,B10,B101,B102,B105,B109,B11,B110,B111,B112,B117,B121,B123,B128,B129,B134,B135,B137,B138,B140,B17,B21,B24,B29,B3,B30,B31,B34,B38,B39,B4,B40,B44,B46,B47,B49,B5,B54,B56,B6,B65,B66,B71,B72,B74,B76,B78,B8,B80,B81,B85,B86,B88,B89,B9,B94,B95,B97,B98,C10,C11,C12,C13,C16,C23,C33,C35,C36,C4,C40,C41,C43,C44,C50,C53,C57,C65,C69,C70,C71,C75,C76,C77,C8,C80,C87,D3,D6
`Chr8:58412328`	`CCA`	`C`	2bp_deletion	frameshift_variant	97	A1,A13,A14,A18,A2,A21,A22,A23,A25,A7,B10,B101,B102,B105,B109,B11,B110,B111,B112,B117,B121,B123,B128,B129,B134,B135,B137,B138,B140,B17,B21,B24,B29,B3,B30,B31,B34,B38,B39,B4,B40,B44,B46,B47,B49,B5,B54,B56,B6,B65,B66,B71,B72,B74,B76,B78,B8,B80,B81,B85,B86,B88,B89,B9,B94,B95,B97,B98,C10,C11,C12,C13,C16,C23,C35,C36,C4,C40,C41,C43,C44,C50,C53,C57,C65,C69,C70,C71,C75,C76,C77,C8,C80,C87,C9,D3,D6
`Chr8:58412341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr8:58412409`	`TGG`	`T`	2bp_deletion	frameshift_variant	107	A1,A11,A13,A16,A18,A19,A2,A20,A21,A22,A7,B10,B101,B102,B103,B105,B108,B109,B11,B110,B122,B123,B125,B130,B134,B137,B139,B14,B15,B17,B2,B21,B23,B28,B29,B3,B30,B31,B34,B38,B39,B4,B40,B44,B49,B5,B52,B53,B54,B56,B59,B61,B65,B68,B7,B72,B73,B74,B76,B78,B8,B81,B85,B87,B88,B92,B94,B95,B97,B99,C1,C10,C11,C12,C13,C15,C16,C21,C25,C27,C34,C35,C36,C4,C41,C43,C47,C48,C49,C51,C53,C57,C6,C60,C62,C65,C67,C70,C71,C76,C77,C78,C8,C80,C81,C9,D6
`Chr8:58412412`	`CG`	`C`	1bp_deletion	frameshift_variant	108	A1,A11,A13,A16,A18,A19,A2,A20,A21,A22,A7,B10,B101,B102,B103,B105,B108,B109,B11,B110,B122,B123,B125,B130,B134,B137,B139,B14,B15,B17,B2,B21,B23,B28,B29,B3,B30,B31,B34,B38,B39,B4,B40,B44,B49,B5,B52,B54,B56,B59,B61,B65,B68,B7,B72,B73,B74,B76,B78,B8,B81,B85,B87,B88,B92,B94,B95,B97,B98,B99,C1,C10,C11,C12,C13,C15,C16,C21,C25,C27,C34,C35,C36,C4,C41,C43,C47,C48,C49,C51,C53,C55,C57,C6,C60,C62,C65,C67,C70,C71,C76,C77,C78,C8,C80,C81,C9,D6
`Chr8:58412465`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B114,B56
`Chr8:58412465`	`TC`	`T`	1bp_deletion	CDS_variant	2	B114,B56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781152.1

554 aa

277

554

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 33-146 aa PF00394 Cu-oxidase 160-299 aa PF07731 Cu-oxidase_2 385-525 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781152.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	33	146	2.3e-40	138.1	Multicopper oxidase
`XP_057781152.1`	Pfam	`PF00394`	Cu-oxidase	Domain	160	299	3.9e-42	144.7	Multicopper oxidase
`XP_057781152.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	385	525	5.2e-31	108.0	Multicopper oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925169.1
ATTGATTTAATTCATTTGCGAAAGAAATATAGTCAATCTTAGTGTAAATTAATGTACTTGCCAGAAGAAGACATTATTACACCTTCATCTTCTTCTTCTTGGCAGACGAGGTGATACCAAAAAGAAAAAAAGAAAAAAAAACATACCACCATATATAACTAAGCATGGGCTCCTGTAGTAGACCCATCTTTGCGGCGTTGTGTGTATGGCTAGCGGTGGTTGCTACGGCGGAGGACCCTTACCACTTCTTCGAATGGCAC...

CDS

1 records

下载 CDS FASTA

LOC130999596
ATGGGCTCCTGTAGTAGACCCATCTTTGCGGCGTTGTGTGTATGGCTAGCGGTGGTTGCTACGGCGGAGGACCCTTACCACTTCTTCGAATGGCACGTGAGCTACGGCACCATCTCCCCTCTGGGCACCCCCCAGCAAGGCATTCTGATCAACAACAAATTCCCCGGCCCCGAGATCAACTGCACCTCCAACAACAACATCATAGTGAACGTGTTCAATGAGCTCGACGAGCCTCTCCTCCTGACCTGGTCGGGCATTCA...

Protein

1 records

下载 Protein FASTA

XP_057781152.1
MGSCSRPIFAALCVWLAVVATAEDPYHFFEWHVSYGTISPLGTPQQGILINNKFPGPEINCTSNNNIIVNVFNELDEPLLLTWSGIQHRKNSWQDGTAGTMCPISPGHNYTYKFQVKDQIGTYIYFPTTALHRAAGGMGMIKVHSRPLIPVPFDNPAQEHAILLGDWYNKGHKTLKRALDAGRSIGKPDGIQINGKSSKVGDAAEPLLTMEAGKTYRLRVCNVGMRLSVNFRIQGHTMKLVEMEGSHTVQNVYDSMDIHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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