当前解析结果
SmilChr08G004741| 统一基因 ID | SmilChr08G004741 |
|---|---|
| 名称 | SmilChr08G004741 |
| 描述 | pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 56779698 - 56780450 / + |
| NCBI Gene ID | LOC130998796 |
|---|---|
| GeneID | 130998796 |
| locus_tag | - |
| NCBI 名称 | LOC130998796 |
| 原始查询 | SmilChr08G004741 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At3g22470%2C mitochondrial-like |
| 拟南芥 | AT3G22470 (AT3G22470)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821818] identity=34.87; qcov=0.972; evalue=2.5e-49; confidence=low |
| 水稻 | Os10g0497300 (PPR794)- identity=34.85; qcov=0.964; evalue=1.48e-41; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998796 |
预测得分表示模型支持程度，不能作为定位概率；所有候选均需实验验证。
当前结果已使用全部46,325条核基因组蛋白的完整原生特征重算。逐条核验39×39×7 PROFEAT、1280维ESM2、整条序列及五组模型的定位判定；当前模型、阈值文件和执行种子有记录。历史缓存及历史执行版本仍未确认。结果为计算候选，预测得分表示模型支持程度，不是校准概率，也不代表实验确认或已建立的预测准确率。模型含部分动物相关标签，应谨慎解读其在植物中的适用性。 四舍五入后概率与阈值相等的481条记录已按未舍入模型值再次复核，原始投票全部一致。
| 排序 | 定位位置 | 预测得分 | 蛋白 ID |
|---|---|---|---|
| 1 | 线粒体 | 1.00000 | XP_057780186.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | 参考等位基因 | 变异等位基因 | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:56779703 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:56779735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C79 |
Chr8:56779762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B73,C23,C37 |
Chr8:56779763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B49,C32,C68 |
Chr8:56779803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:56779857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,D10 |
Chr8:56779867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C40 |
Chr8:56779873 |
AT |
A |
1bp_deletion | frameshift_variant | 13 | A18,A21,A4,B60,B70,C11,C19,C26,C38,C46,C69,C79,C8 |
Chr8:56779927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B6,B67 |
Chr8:56779954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C46,C69 |
Chr8:56779974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr8:56779996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B37,C25,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780186.1PF13812
PPR_3 8-63 aa
PF12854
PPR_1 16-47 aa
PF13041
PPR_2 18-61 aa
PF01535
PPR 21-49 aa
PF12854
PPR_1 67-95 aa
PF01535
PPR 73-95 aa
PF13812
PPR_3 102-153 aa
PF13041
PPR_2 105-153 aa
PF01535
PPR 108-135 aa
PF17177
PPR_long 123-229 aa
PF12854
PPR_1 138-169 aa
PF13041
PPR_2 141-189 aa
PF01535
PPR 144-173 aa
PF23276
TPR_24 145-235 aa
PF13812
PPR_3 163-222 aa
PF12854
PPR_1 171-202 aa
PF13041
PPR_2 175-224 aa
PF01535
PPR 178-208 aa
PF12854
PPR_1 206-236 aa
PF01535
PPR 213-237 aa
| 蛋白 ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | 得分 | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780186.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 8 | 63 | 7.2e-33 | 113.2 | Pentatricopeptide repeat domain |
XP_057780186.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 16 | 47 | 7.9e-62 | 205.4 | PPR repeat |
XP_057780186.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 18 | 61 | 3e-72 | 239.3 | PPR repeat family |
XP_057780186.1 |
Pfam | PF01535 |
PPR | Repeat | 21 | 49 | 4.7e-46 | 152.6 | PPR repeat |
XP_057780186.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 67 | 95 | 7.9e-62 | 205.4 | PPR repeat |
XP_057780186.1 |
Pfam | PF01535 |
PPR | Repeat | 73 | 95 | 4.7e-46 | 152.6 | PPR repeat |
XP_057780186.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 102 | 153 | 7.2e-33 | 113.2 | Pentatricopeptide repeat domain |
XP_057780186.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 105 | 153 | 3e-72 | 239.3 | PPR repeat family |
XP_057780186.1 |
Pfam | PF01535 |
PPR | Repeat | 108 | 135 | 4.7e-46 | 152.6 | PPR repeat |
XP_057780186.1 |
Pfam | PF17177 |
PPR_long | Repeat | 123 | 229 | 2.5e-09 | 37.5 | Pentacotripeptide-repeat region of PRORP |
XP_057780186.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 138 | 169 | 7.9e-62 | 205.4 | PPR repeat |
XP_057780186.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 141 | 189 | 3e-72 | 239.3 | PPR repeat family |
XP_057780186.1 |
Pfam | PF01535 |
PPR | Repeat | 144 | 173 | 4.7e-46 | 152.6 | PPR repeat |
XP_057780186.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 145 | 235 | 1e-15 | 58.5 | Pentatricopeptide repeat-containing protein |
XP_057780186.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 163 | 222 | 7.2e-33 | 113.2 | Pentatricopeptide repeat domain |
XP_057780186.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 171 | 202 | 7.9e-62 | 205.4 | PPR repeat |
XP_057780186.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 175 | 224 | 3e-72 | 239.3 | PPR repeat family |
XP_057780186.1 |
Pfam | PF01535 |
PPR | Repeat | 178 | 208 | 4.7e-46 | 152.6 | PPR repeat |
XP_057780186.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 206 | 236 | 7.9e-62 | 205.4 | PPR repeat |
XP_057780186.1 |
Pfam | PF01535 |
PPR | Repeat | 213 | 237 | 4.7e-46 | 152.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。