丹参 accession 列列出该位点的参考蛋白,不代表已确定同源转移的具体 isoform。Salvia splendens STRING 标识不是丹参 XP accession;来源关联边不一定是直接物理结合。候选分数未经过丹参金标准概率校准。

丹参候选蛋白关联网络

当前模块整合丹参本地 STRING-like 候选关联和 Salvia splendens 官方 STRING v12.0 同源转移证据。默认展示双证据支持结果;所有结果均为候选蛋白关联,不等同于实验验证的物理互作。

按基因 ID 查询候选关联

示例

模型说明

同时被本地 STRING-like 预测和 Salvia splendens 官方 STRING 同源转移支持。

官方 STRING 层来自 Salvia splendens,不是丹参本物种 STRING 直接证据;同源转移使用丹参蛋白与 STRING 蛋白的 BLASTP 最佳匹配。

本地 STRING-like 分数是序列、结构域、定位和长度特征的启发式候选排序,尚未以丹参原生金标准互作集完成独立基准评估。因此仅应将其作为探索性筛选;默认“双证据支持”不等同于实验验证。

物种: Salvia miltiorrhiza
本地候选记录: 416557
官方同源转移边: 851880
双证据边: 10369

候选关联基因

查询基因: SmilChr05G001096

当前证据层: 双证据支持

下载当前查询 TSV

排序 候选基因 来源蛋白 ID(STRING 转移或本地)丹参位点蛋白 ID 证据层 本地分数 官方 STRING 分数 来源 证据
1 SmilChr02G000714 180675.A0A4D8XWJ0SmilChr02G000714.1 双证据支持 80.99 999 Salvia splendens STRING v12.0
experiments_transferred:109; database_transferred:999; coexpression_transferred:168; textmining_transferred:458; neighborhood_transferred:132; cooccurence:52; homology:977
2 SmilChr01G004359 180675.A0A4D9AEW7SmilChr01G004359.1 双证据支持 36.64 961 Salvia splendens STRING v12.0
experiments_transferred:348; database_transferred:873; coexpression_transferred:53; textmining_transferred:500; neighborhood_transferred:180
3 SmilChr02G004233 180675.A0A4D8ZDC3SmilChr02G004233.1 双证据支持 40.68 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
4 SmilChr08G004495 180675.A0A4D8ZFE5SmilChr08G004495.1 双证据支持 40.08 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
5 SmilChr04G003505 180675.A0A4D9BSJ2SmilChr04G003505.1;SmilChr04G003505.2;SmilChr04G003505.3;SmilChr04G003505.4 双证据支持 39.40 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
6 SmilChr06G000919 180675.A0A4D8Y9K3SmilChr06G000919.1 双证据支持 38.80 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
7 SmilChr01G003283 180675.A0A4D8Z4H4SmilChr01G003283.1 双证据支持 38.28 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
8 SmilChr01G005423 180675.A0A4D8Z5C0SmilChr01G005423.1 双证据支持 37.69 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
9 SmilChr01G004222 180675.A0A4D8ZH64SmilChr01G004222.1;SmilChr01G004222.2 双证据支持 37.48 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
10 SmilChr03G000052 180675.A0A4D8YJL9SmilChr03G000052.1 双证据支持 37.27 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
11 SmilChr01G005458 180675.A0A4D8Z4X9SmilChr01G005458.1 双证据支持 36.94 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
12 SmilChr04G000554 180675.A0A4D9AM46SmilChr04G000554.1 双证据支持 33.69 910 Salvia splendens STRING v12.0
experiments_transferred:108; database_transferred:863; coexpression_transferred:53; textmining_transferred:315; neighborhood_transferred:41
13 SmilChr02G001660 180675.A0A4D8ZM08SmilChr02G001660.1 双证据支持 35.05 875 Salvia splendens STRING v12.0
experiments_transferred:87; database_transferred:863; textmining_transferred:88; neighborhood_transferred:41
14 SmilChr02G001671 180675.A0A4D9BFL4SmilChr02G001671.1 双证据支持 33.67 875 Salvia splendens STRING v12.0
experiments_transferred:87; database_transferred:863; textmining_transferred:88; neighborhood_transferred:41

双序列关联评分

可输入两段 CDS 或蛋白序列。标题仅作查找线索;提交序列须与站内参考蛋白完全一致,未提供可靠位点信息的跨位点相同序列不作唯一身份认定。若可确认匹配,系统会优先整合 Salvia splendens 官方 STRING 同源转移、本地 STRING-like 和序列相容性进行综合评分;序列相似性只作为辅助特征,不会单独判定互作。

每个输入框仅接受单条序列或单条 FASTA。自动模式将不少于 90 nt 的 A/C/G/T/U/N 序列按第一阅读框解析为 CDS;其他序列按蛋白解析。模糊 CDS 或仅由这些字母组成的蛋白请显式选择类型。蛋白支持标准氨基酸和 X,CDS 须为 3 的倍数且无内部终止密码子。

示例
示例