TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr01G005298; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00002362-RA_Salv SmilChr01G005298 ARR-B XP_057788621.1 MP00010 AAAGATACGG

Predicted Target Genes

9778 binding sites 8344 candidate target genes Page 1 / 167 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr01G003544 Chr01 NC_080387.1:54031371-54031380in promoter 2647-2656 bp - 1345 bp upstream of target TSS 100.0/ 100 3 54032725-54035627(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr01G000260 Chr01 NC_080387.1:5024064-5024073in promoter 3884-3893 bp + 108 bp upstream of target TSS 100.0/ 100 2 5022327-5023956(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr01G000311 Chr01 NC_080387.1:6019532-6019541in promoter 3763-3772 bp - 229 bp upstream of target TSS 100.0/ 100 2 6017775-6019303(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr07G004123 Chr07 NC_080393.1:52890061-52890070in promoter 3673-3682 bp + 319 bp upstream of target TSS 100.0/ 100 2 52890389-52892374(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr03G004659 Chr03 NC_080389.1:64079997-64080006in promoter 3386-3395 bp - 606 bp upstream of target TSS 100.0/ 100 2 64080612-64082060(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr04G003266 Chr04 NC_080390.1:49379778-49379787in promoter 3011-3020 bp - 981 bp upstream of target TSS 100.0/ 100 2 49377857-49378797(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr05G000815 Chr05 NC_080391.1:6371770-6371779in promoter 2771-2780 bp + 1221 bp upstream of target TSS 100.0/ 100 2 6373000-6373649(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr08G003220 Chr08 NC_080394.1:33073076-33073085in promoter 2474-2483 bp + 1518 bp upstream of target TSS 100.0/ 100 2 33070434-33071558(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr07G004122 Chr07 NC_080393.1:52889934-52889943in promoter 2245-2254 bp + 1747 bp upstream of target TSS 100.0/ 100 2 52886807-52888187(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G002717 Chr02 NC_080388.1:47009318-47009327in promoter 2128-2137 bp + 1864 bp upstream of target TSS 100.0/ 100 2 47011191-47012495(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr02G001954 Chr02 NC_080388.1:35255983-35255992in promoter 1958-1967 bp - 2034 bp upstream of target TSS 100.0/ 100 2 35252986-35253949(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr05G002341 Chr05 NC_080391.1:25364716-25364725in promoter 1902-1911 bp - 2090 bp upstream of target TSS 100.0/ 100 2 25360464-25362626(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr01G000907 Chr01 NC_080387.1:19147036-19147045in promoter 1833-1842 bp - 2159 bp upstream of target TSS 100.0/ 100 2 19142241-19144877(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr04G001958 Chr04 NC_080390.1:31793546-31793555in promoter 1819-1828 bp + 2173 bp upstream of target TSS 100.0/ 100 2 31790335-31791373(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr04G004107 Chr04 NC_080390.1:56017456-56017465in promoter 1455-1464 bp + 2537 bp upstream of target TSS 100.0/ 100 2 56020002-56021164(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr07G001928 Chr07 NC_080393.1:16685246-16685255in promoter 1338-1347 bp + 2654 bp upstream of target TSS 100.0/ 100 2 16681836-16682592(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr01G002841 Chr01 NC_080387.1:46980875-46980884in promoter 1293-1302 bp + 2699 bp upstream of target TSS 100.0/ 100 2 46983583-46984509(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr07G001102 Chr07 NC_080393.1:8128581-8128590in promoter 1285-1294 bp + 2707 bp upstream of target TSS 100.0/ 100 2 8123588-8125874(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr03G000641 Chr03 NC_080389.1:7046231-7046240in promoter 1217-1226 bp + 2775 bp upstream of target TSS 100.0/ 100 2 7049015-7051076(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr05G001029 Chr05 NC_080391.1:8442142-8442151in promoter 1092-1101 bp - 2900 bp upstream of target TSS 100.0/ 100 2 8445051-8448787(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr06G002313 Chr06 NC_080392.1:33398927-33398936in promoter 1070-1079 bp - 2922 bp upstream of target TSS 100.0/ 100 2 33401858-33403165(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G005537 Chr02 NC_080388.1:75411222-75411231in promoter 961-970 bp + 3031 bp upstream of target TSS 100.0/ 100 2 75404654-75408191(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr05G003988 Chr05 NC_080391.1:53717150-53717159in promoter 790-799 bp - 3202 bp upstream of target TSS 100.0/ 100 2 53720361-53724172(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr08G002244 Chr08 NC_080394.1:20604752-20604761in promoter 666-675 bp + 3326 bp upstream of target TSS 100.0/ 100 2 20596142-20601426(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G004827 Chr02 NC_080388.1:70371548-70371557in promoter 460-469 bp + 3532 bp upstream of target TSS 100.0/ 100 2 70375089-70379544(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr02G005475 Chr02 NC_080388.1:74991247-74991256in promoter 425-434 bp - 3567 bp upstream of target TSS 100.0/ 100 2 74994823-74996411(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr03G001980 Chr03 NC_080389.1:28857450-28857459in promoter 329-338 bp - 3663 bp upstream of target TSS 100.0/ 100 2 28850744-28853787(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr07G001566 Chr07 NC_080393.1:12888915-12888924in promoter 316-325 bp - 3676 bp upstream of target TSS 100.0/ 100 2 12874773-12885239(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr08G003119 Chr08 NC_080394.1:31431785-31431794in promoter 178-187 bp - 3814 bp upstream of target TSS 100.0/ 100 2 31435608-31437266(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr03G002894 Chr03 NC_080389.1:45649539-45649548in promoter 75-84 bp + 3917 bp upstream of target TSS 100.0/ 100 2 45653465-45665544(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr03G000144 Chr03 NC_080389.1:1572349-1572358in promoter 15-24 bp + 3977 bp upstream of target TSS 100.0/ 100 2 1576335-1579231(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr01G000110 Chr01 NC_080387.1:1867315-1867324in promoter 3983-3992 bp - 9 bp upstream of target TSS 100.0/ 100 1 1867333-1868857(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr01G002840 Chr01 NC_080387.1:46980875-46980884in promoter 3972-3981 bp + 20 bp upstream of target TSS 100.0/ 100 1 46980904-46983021(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr05G001825 Chr05 NC_080391.1:18251884-18251893in promoter 3939-3948 bp + 53 bp upstream of target TSS 100.0/ 100 1 18249099-18251831(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr08G003118 Chr08 NC_080394.1:31431785-31431794in promoter 3929-3938 bp - 63 bp upstream of target TSS 100.0/ 100 1 31431857-31432816(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G002477 Chr02 NC_080388.1:43152948-43152957in promoter 3860-3869 bp - 132 bp upstream of target TSS 100.0/ 100 1 43153089-43160224(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr03G004393 Chr03 NC_080389.1:62107822-62107831in promoter 3854-3863 bp - 138 bp upstream of target TSS 100.0/ 100 1 62107969-62119002(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr07G004032 Chr07 NC_080393.1:51497376-51497385in promoter 3792-3801 bp - 200 bp upstream of target TSS 100.0/ 100 1 51497585-51499127(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G005102 Chr02 NC_080388.1:72563627-72563636in promoter 3722-3731 bp - 270 bp upstream of target TSS 100.0/ 100 1 72561030-72563357(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr01G002589 Chr01 NC_080387.1:44017696-44017705in promoter 3693-3702 bp - 299 bp upstream of target TSS 100.0/ 100 1 44016632-44017397(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr01G005729 Chr01 NC_080387.1:73432132-73432141in promoter 3630-3639 bp - 362 bp upstream of target TSS 100.0/ 100 1 73432503-73439654(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr05G002547 Chr05 NC_080391.1:28518687-28518696in promoter 3553-3562 bp + 439 bp upstream of target TSS 100.0/ 100 1 28515688-28518248(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr05G002558 Chr05 NC_080391.1:28712224-28712233in promoter 3553-3562 bp + 439 bp upstream of target TSS 100.0/ 100 1 28709105-28711785(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G002183 Chr02 NC_080388.1:39034582-39034591in promoter 3483-3492 bp - 509 bp upstream of target TSS 100.0/ 100 1 39035100-39037243(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G003934 Chr02 NC_080388.1:61408657-61408666in promoter 3373-3382 bp - 619 bp upstream of target TSS 100.0/ 100 1 61409285-61410546(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr04G003366 Chr04 NC_080390.1:50242872-50242881in promoter 3355-3364 bp + 637 bp upstream of target TSS 100.0/ 100 1 50243518-50249100(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr07G000851 Chr07 NC_080393.1:6068745-6068754in promoter 3292-3301 bp - 700 bp upstream of target TSS 100.0/ 100 1 6069454-6071474(+) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr05G001560 Chr05 NC_080391.1:14295614-14295623in promoter 3272-3281 bp + 720 bp upstream of target TSS 100.0/ 100 1 14296343-14296823(+) SMil_00002362-RA_Salv MP00010 AAAGATACGG
SmilChr07G001115 Chr07 NC_080393.1:8272033-8272042in promoter 3251-3260 bp + 741 bp upstream of target TSS 100.0/ 100 1 8269897-8271292(-) SMil_00002362-RA_Salv MP00010 CCGTATCTTT
SmilChr02G001208 Chr02 NC_080388.1:22250134-22250143in promoter 3194-3203 bp - 798 bp upstream of target TSS 100.0/ 100 1 22245375-22249336(-) SMil_00002362-RA_Salv MP00010 AAAGATACGG