Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr01G005298; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00002362-RA_Salv |
SmilChr01G005298 |
ARR-B | XP_057788621.1 |
MP00010 |
AAAGATACGG |
9778 binding sites 8344 candidate target genes Page 1 / 167 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr01G003544 |
Chr01 | NC_080387.1:54031371-54031380in promoter 2647-2656 bp |
- | 1345 bp upstream of target TSS | 100.0/ 100 | 3 | 54032725-54035627(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr01G000260 |
Chr01 | NC_080387.1:5024064-5024073in promoter 3884-3893 bp |
+ | 108 bp upstream of target TSS | 100.0/ 100 | 2 | 5022327-5023956(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr01G000311 |
Chr01 | NC_080387.1:6019532-6019541in promoter 3763-3772 bp |
- | 229 bp upstream of target TSS | 100.0/ 100 | 2 | 6017775-6019303(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr07G004123 |
Chr07 | NC_080393.1:52890061-52890070in promoter 3673-3682 bp |
+ | 319 bp upstream of target TSS | 100.0/ 100 | 2 | 52890389-52892374(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr03G004659 |
Chr03 | NC_080389.1:64079997-64080006in promoter 3386-3395 bp |
- | 606 bp upstream of target TSS | 100.0/ 100 | 2 | 64080612-64082060(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr04G003266 |
Chr04 | NC_080390.1:49379778-49379787in promoter 3011-3020 bp |
- | 981 bp upstream of target TSS | 100.0/ 100 | 2 | 49377857-49378797(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr05G000815 |
Chr05 | NC_080391.1:6371770-6371779in promoter 2771-2780 bp |
+ | 1221 bp upstream of target TSS | 100.0/ 100 | 2 | 6373000-6373649(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr08G003220 |
Chr08 | NC_080394.1:33073076-33073085in promoter 2474-2483 bp |
+ | 1518 bp upstream of target TSS | 100.0/ 100 | 2 | 33070434-33071558(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr07G004122 |
Chr07 | NC_080393.1:52889934-52889943in promoter 2245-2254 bp |
+ | 1747 bp upstream of target TSS | 100.0/ 100 | 2 | 52886807-52888187(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G002717 |
Chr02 | NC_080388.1:47009318-47009327in promoter 2128-2137 bp |
+ | 1864 bp upstream of target TSS | 100.0/ 100 | 2 | 47011191-47012495(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr02G001954 |
Chr02 | NC_080388.1:35255983-35255992in promoter 1958-1967 bp |
- | 2034 bp upstream of target TSS | 100.0/ 100 | 2 | 35252986-35253949(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr05G002341 |
Chr05 | NC_080391.1:25364716-25364725in promoter 1902-1911 bp |
- | 2090 bp upstream of target TSS | 100.0/ 100 | 2 | 25360464-25362626(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr01G000907 |
Chr01 | NC_080387.1:19147036-19147045in promoter 1833-1842 bp |
- | 2159 bp upstream of target TSS | 100.0/ 100 | 2 | 19142241-19144877(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr04G001958 |
Chr04 | NC_080390.1:31793546-31793555in promoter 1819-1828 bp |
+ | 2173 bp upstream of target TSS | 100.0/ 100 | 2 | 31790335-31791373(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr04G004107 |
Chr04 | NC_080390.1:56017456-56017465in promoter 1455-1464 bp |
+ | 2537 bp upstream of target TSS | 100.0/ 100 | 2 | 56020002-56021164(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr07G001928 |
Chr07 | NC_080393.1:16685246-16685255in promoter 1338-1347 bp |
+ | 2654 bp upstream of target TSS | 100.0/ 100 | 2 | 16681836-16682592(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr01G002841 |
Chr01 | NC_080387.1:46980875-46980884in promoter 1293-1302 bp |
+ | 2699 bp upstream of target TSS | 100.0/ 100 | 2 | 46983583-46984509(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr07G001102 |
Chr07 | NC_080393.1:8128581-8128590in promoter 1285-1294 bp |
+ | 2707 bp upstream of target TSS | 100.0/ 100 | 2 | 8123588-8125874(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr03G000641 |
Chr03 | NC_080389.1:7046231-7046240in promoter 1217-1226 bp |
+ | 2775 bp upstream of target TSS | 100.0/ 100 | 2 | 7049015-7051076(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr05G001029 |
Chr05 | NC_080391.1:8442142-8442151in promoter 1092-1101 bp |
- | 2900 bp upstream of target TSS | 100.0/ 100 | 2 | 8445051-8448787(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr06G002313 |
Chr06 | NC_080392.1:33398927-33398936in promoter 1070-1079 bp |
- | 2922 bp upstream of target TSS | 100.0/ 100 | 2 | 33401858-33403165(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G005537 |
Chr02 | NC_080388.1:75411222-75411231in promoter 961-970 bp |
+ | 3031 bp upstream of target TSS | 100.0/ 100 | 2 | 75404654-75408191(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr05G003988 |
Chr05 | NC_080391.1:53717150-53717159in promoter 790-799 bp |
- | 3202 bp upstream of target TSS | 100.0/ 100 | 2 | 53720361-53724172(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr08G002244 |
Chr08 | NC_080394.1:20604752-20604761in promoter 666-675 bp |
+ | 3326 bp upstream of target TSS | 100.0/ 100 | 2 | 20596142-20601426(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G004827 |
Chr02 | NC_080388.1:70371548-70371557in promoter 460-469 bp |
+ | 3532 bp upstream of target TSS | 100.0/ 100 | 2 | 70375089-70379544(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr02G005475 |
Chr02 | NC_080388.1:74991247-74991256in promoter 425-434 bp |
- | 3567 bp upstream of target TSS | 100.0/ 100 | 2 | 74994823-74996411(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr03G001980 |
Chr03 | NC_080389.1:28857450-28857459in promoter 329-338 bp |
- | 3663 bp upstream of target TSS | 100.0/ 100 | 2 | 28850744-28853787(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr07G001566 |
Chr07 | NC_080393.1:12888915-12888924in promoter 316-325 bp |
- | 3676 bp upstream of target TSS | 100.0/ 100 | 2 | 12874773-12885239(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr08G003119 |
Chr08 | NC_080394.1:31431785-31431794in promoter 178-187 bp |
- | 3814 bp upstream of target TSS | 100.0/ 100 | 2 | 31435608-31437266(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr03G002894 |
Chr03 | NC_080389.1:45649539-45649548in promoter 75-84 bp |
+ | 3917 bp upstream of target TSS | 100.0/ 100 | 2 | 45653465-45665544(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr03G000144 |
Chr03 | NC_080389.1:1572349-1572358in promoter 15-24 bp |
+ | 3977 bp upstream of target TSS | 100.0/ 100 | 2 | 1576335-1579231(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr01G000110 |
Chr01 | NC_080387.1:1867315-1867324in promoter 3983-3992 bp |
- | 9 bp upstream of target TSS | 100.0/ 100 | 1 | 1867333-1868857(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr01G002840 |
Chr01 | NC_080387.1:46980875-46980884in promoter 3972-3981 bp |
+ | 20 bp upstream of target TSS | 100.0/ 100 | 1 | 46980904-46983021(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr05G001825 |
Chr05 | NC_080391.1:18251884-18251893in promoter 3939-3948 bp |
+ | 53 bp upstream of target TSS | 100.0/ 100 | 1 | 18249099-18251831(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr08G003118 |
Chr08 | NC_080394.1:31431785-31431794in promoter 3929-3938 bp |
- | 63 bp upstream of target TSS | 100.0/ 100 | 1 | 31431857-31432816(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G002477 |
Chr02 | NC_080388.1:43152948-43152957in promoter 3860-3869 bp |
- | 132 bp upstream of target TSS | 100.0/ 100 | 1 | 43153089-43160224(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr03G004393 |
Chr03 | NC_080389.1:62107822-62107831in promoter 3854-3863 bp |
- | 138 bp upstream of target TSS | 100.0/ 100 | 1 | 62107969-62119002(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr07G004032 |
Chr07 | NC_080393.1:51497376-51497385in promoter 3792-3801 bp |
- | 200 bp upstream of target TSS | 100.0/ 100 | 1 | 51497585-51499127(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G005102 |
Chr02 | NC_080388.1:72563627-72563636in promoter 3722-3731 bp |
- | 270 bp upstream of target TSS | 100.0/ 100 | 1 | 72561030-72563357(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr01G002589 |
Chr01 | NC_080387.1:44017696-44017705in promoter 3693-3702 bp |
- | 299 bp upstream of target TSS | 100.0/ 100 | 1 | 44016632-44017397(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr01G005729 |
Chr01 | NC_080387.1:73432132-73432141in promoter 3630-3639 bp |
- | 362 bp upstream of target TSS | 100.0/ 100 | 1 | 73432503-73439654(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr05G002547 |
Chr05 | NC_080391.1:28518687-28518696in promoter 3553-3562 bp |
+ | 439 bp upstream of target TSS | 100.0/ 100 | 1 | 28515688-28518248(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr05G002558 |
Chr05 | NC_080391.1:28712224-28712233in promoter 3553-3562 bp |
+ | 439 bp upstream of target TSS | 100.0/ 100 | 1 | 28709105-28711785(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G002183 |
Chr02 | NC_080388.1:39034582-39034591in promoter 3483-3492 bp |
- | 509 bp upstream of target TSS | 100.0/ 100 | 1 | 39035100-39037243(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G003934 |
Chr02 | NC_080388.1:61408657-61408666in promoter 3373-3382 bp |
- | 619 bp upstream of target TSS | 100.0/ 100 | 1 | 61409285-61410546(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr04G003366 |
Chr04 | NC_080390.1:50242872-50242881in promoter 3355-3364 bp |
+ | 637 bp upstream of target TSS | 100.0/ 100 | 1 | 50243518-50249100(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr07G000851 |
Chr07 | NC_080393.1:6068745-6068754in promoter 3292-3301 bp |
- | 700 bp upstream of target TSS | 100.0/ 100 | 1 | 6069454-6071474(+) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr05G001560 |
Chr05 | NC_080391.1:14295614-14295623in promoter 3272-3281 bp |
+ | 720 bp upstream of target TSS | 100.0/ 100 | 1 | 14296343-14296823(+) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |
SmilChr07G001115 |
Chr07 | NC_080393.1:8272033-8272042in promoter 3251-3260 bp |
+ | 741 bp upstream of target TSS | 100.0/ 100 | 1 | 8269897-8271292(-) |
SMil_00002362-RA_Salv |
MP00010 |
CCGTATCTTT |
SmilChr02G001208 |
Chr02 | NC_080388.1:22250134-22250143in promoter 3194-3203 bp |
- | 798 bp upstream of target TSS | 100.0/ 100 | 1 | 22245375-22249336(-) |
SMil_00002362-RA_Salv |
MP00010 |
AAAGATACGG |