Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr03G003439; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00005108-RA_Salv |
SmilChr03G003439 |
bHLH | XP_057798243.1 |
MP00195 |
TTAGCAACTTGCAT |
9832 binding sites 6878 candidate target genes Page 1 / 138 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr02G003220 |
Chr02 | NC_080388.1:53426503-53426516in promoter 1944-1957 bp |
+ | 2044 bp upstream of target TSS | 98.9/ 100 | 2 | 53422811-53424459(-) |
SMil_00005108-RA_Salv |
MP00195 |
ATGCAAGTGGCCCA |
SmilChr01G000839 |
Chr01 | NC_080387.1:18134980-18134993in promoter 3155-3168 bp |
+ | 833 bp upstream of target TSS | 98.8/ 100 | 3 | 18111466-18134147(-) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCAAGTTGCCGA |
SmilChr02G004720 |
Chr02 | NC_080388.1:69455108-69455121in promoter 1779-1792 bp |
- | 2209 bp upstream of target TSS | 98.8/ 100 | 2 | 69449774-69452899(-) |
SMil_00005108-RA_Salv |
MP00195 |
TTGGCAACTTGCCC |
SmilChr01G005806 |
Chr01 | NC_080387.1:74110063-74110076in promoter 2642-2655 bp |
+ | 1346 bp upstream of target TSS | 98.8/ 100 | 1 | 74108120-74108717(-) |
SMil_00005108-RA_Salv |
MP00195 |
GTGCAAGTGGCTCC |
SmilChr01G003164 |
Chr01 | NC_080387.1:50453984-50453997in promoter 1147-1160 bp |
+ | 2841 bp upstream of target TSS | 98.6/ 100 | 5 | 50449264-50451143(-) |
SMil_00005108-RA_Salv |
MP00195 |
TTGCAAGTGGCCCA |
SmilChr01G005836 |
Chr01 | NC_080387.1:74378241-74378254in promoter 3966-3979 bp |
+ | 22 bp upstream of target TSS | 98.6/ 100 | 1 | 74371627-74378219(-) |
SMil_00005108-RA_Salv |
MP00195 |
TTGCAAGTGGCCCA |
SmilChr01G005088 |
Chr01 | NC_080387.1:68757417-68757430in promoter 3911-3924 bp |
+ | 77 bp upstream of target TSS | 98.5/ 100 | 1 | 68757507-68758834(+) |
SMil_00005108-RA_Salv |
MP00195 |
TCGCCAACTTGCCC |
SmilChr02G002678 |
Chr02 | NC_080388.1:46348631-46348644in promoter 3043-3056 bp |
+ | 945 bp upstream of target TSS | 98.3/ 100 | 2 | 46349589-46352170(+) |
SMil_00005108-RA_Salv |
MP00195 |
TTGGCAACTTGCCT |
SmilChr02G002674 |
Chr02 | NC_080388.1:46335077-46335090in promoter 3577-3590 bp |
+ | 411 bp upstream of target TSS | 98.3/ 100 | 1 | 46335501-46337831(+) |
SMil_00005108-RA_Salv |
MP00195 |
TTGGCAACTTGCCT |
SmilChr02G002733 |
Chr02 | NC_080388.1:47250943-47250956in promoter 2392-2405 bp |
+ | 1596 bp upstream of target TSS | 98.3/ 100 | 1 | 47252552-47261659(+) |
SMil_00005108-RA_Salv |
MP00195 |
GGAGCAACTTGCCT |
SmilChr02G003049 |
Chr02 | NC_080388.1:51285521-51285534in promoter 2082-2095 bp |
- | 1906 bp upstream of target TSS | 98.3/ 100 | 1 | 51287440-51289156(+) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCAAGTTGCTCC |
SmilChr01G005812 |
Chr01 | NC_080387.1:74131599-74131612in promoter 1685-1698 bp |
+ | 2303 bp upstream of target TSS | 98.3/ 100 | 1 | 74128540-74129296(-) |
SMil_00005108-RA_Salv |
MP00195 |
ATGCAAGTGGCTCC |
SmilChr02G000720 |
Chr02 | NC_080388.1:11589074-11589087in promoter 938-951 bp |
- | 3050 bp upstream of target TSS | 98.3/ 100 | 1 | 11592137-11595069(+) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCAAGTTGCTCC |
SmilChr03G000333 |
Chr03 | NC_080389.1:3774336-3774349in promoter 836-849 bp |
+ | 3152 bp upstream of target TSS | 98.3/ 100 | 1 | 3777501-3780755(+) |
SMil_00005108-RA_Salv |
MP00195 |
GGAGCAACTTGCCT |
SmilChr01G004164 |
Chr01 | NC_080387.1:60132495-60132508in promoter 3428-3441 bp |
+ | 560 bp upstream of target TSS | 98.2/ 100 | 2 | 60133068-60134915(+) |
SMil_00005108-RA_Salv |
MP00195 |
GCGGCAACTTGCCG |
SmilChr02G002089 |
Chr02 | NC_080388.1:37482564-37482577in promoter 2233-2246 bp |
+ | 1755 bp upstream of target TSS | 98.2/ 100 | 2 | 37484332-37487742(+) |
SMil_00005108-RA_Salv |
MP00195 |
TCGGCAACTTGCCG |
SmilChr03G001690 |
Chr03 | NC_080389.1:22416104-22416117in promoter 3579-3592 bp |
+ | 409 bp upstream of target TSS | 98.2/ 100 | 1 | 22415028-22415695(-) |
SMil_00005108-RA_Salv |
MP00195 |
CGGCAAGTTGCCGC |
SmilChr01G004091 |
Chr01 | NC_080387.1:59349126-59349139in promoter 2628-2641 bp |
- | 1360 bp upstream of target TSS | 98.2/ 100 | 1 | 59350499-59351367(+) |
SMil_00005108-RA_Salv |
MP00195 |
CGGCAAGTTGCCGC |
SmilChr03G003655 |
Chr03 | NC_080389.1:55391847-55391860in promoter 2219-2232 bp |
+ | 1769 bp upstream of target TSS | 98.2/ 100 | 1 | 55388151-55390078(-) |
SMil_00005108-RA_Salv |
MP00195 |
CGGCAAGTTGCCGC |
SmilChr02G000602 |
Chr02 | NC_080388.1:8760134-8760147in promoter 1903-1916 bp |
+ | 2085 bp upstream of target TSS | 98.2/ 100 | 1 | 8762232-8763090(+) |
SMil_00005108-RA_Salv |
MP00195 |
TCGGCAACTTGCCG |
SmilChr03G003606 |
Chr03 | NC_080389.1:54707125-54707138in promoter 1206-1219 bp |
- | 2782 bp upstream of target TSS | 98.2/ 100 | 1 | 54709920-54711214(+) |
SMil_00005108-RA_Salv |
MP00195 |
CGGCAAGTTGCCGA |
SmilChr01G004909 |
Chr01 | NC_080387.1:67123083-67123096in promoter 563-576 bp |
+ | 3425 bp upstream of target TSS | 98.2/ 100 | 1 | 67126521-67126717(+) |
SMil_00005108-RA_Salv |
MP00195 |
GCGGCAACTTGCCG |
SmilChr01G004404 |
Chr01 | NC_080387.1:62151211-62151224in promoter 269-282 bp |
- | 3719 bp upstream of target TSS | 98.1/ 100 | 5 | 62144212-62147492(-) |
SMil_00005108-RA_Salv |
MP00195 |
TGGCCAACTTGCCT |
SmilChr01G006057 |
Chr01 | NC_080387.1:76032629-76032642in promoter 2656-2669 bp |
+ | 1332 bp upstream of target TSS | 98.1/ 100 | 3 | 76033974-76039301(+) |
SMil_00005108-RA_Salv |
MP00195 |
GGGCCCACTTGCAT |
SmilChr01G006056 |
Chr01 | NC_080387.1:76032629-76032642in promoter 1666-1679 bp |
+ | 2322 bp upstream of target TSS | 98.1/ 100 | 3 | 76027185-76030307(-) |
SMil_00005108-RA_Salv |
MP00195 |
ATGCAAGTGGGCCC |
SmilChr02G003853 |
Chr02 | NC_080388.1:60302011-60302024in promoter 1548-1561 bp |
- | 2440 bp upstream of target TSS | 98.1/ 100 | 2 | 60298047-60299571(-) |
SMil_00005108-RA_Salv |
MP00195 |
ACGGCCACTTGCAT |
SmilChr01G005683 |
Chr01 | NC_080387.1:73100090-73100103in promoter 891-904 bp |
+ | 3097 bp upstream of target TSS | 98.1/ 100 | 2 | 73096556-73096993(-) |
SMil_00005108-RA_Salv |
MP00195 |
GGGCAAGTTGGCAA |
SmilChr01G003536 |
Chr01 | NC_080387.1:53983108-53983121in promoter 2996-3009 bp |
+ | 992 bp upstream of target TSS | 98.1/ 100 | 1 | 53984113-53988903(+) |
SMil_00005108-RA_Salv |
MP00195 |
TCGCCAACTTGCCT |
SmilChr01G001011 |
Chr01 | NC_080387.1:21234963-21234976in promoter 2168-2181 bp |
+ | 1820 bp upstream of target TSS | 98.0/ 100 | 6 | 21236796-21236868(+) |
SMil_00005108-RA_Salv |
MP00195 |
TCGGCAACTTGCTC |
SmilChr01G001010 |
Chr01 | NC_080387.1:21234963-21234976in promoter 1679-1692 bp |
+ | 2309 bp upstream of target TSS | 98.0/ 100 | 6 | 21227796-21232654(-) |
SMil_00005108-RA_Salv |
MP00195 |
GAGCAAGTTGCCGA |
SmilChr02G000885 |
Chr02 | NC_080388.1:15257692-15257705in promoter 3798-3811 bp |
- | 190 bp upstream of target TSS | 98.0/ 100 | 4 | 15256490-15257502(-) |
SMil_00005108-RA_Salv |
MP00195 |
TCACCAACTTGCCC |
SmilChr01G005913 |
Chr01 | NC_080387.1:74966429-74966442in promoter 3298-3311 bp |
- | 690 bp upstream of target TSS | 98.0/ 100 | 3 | 74967132-74968905(+) |
SMil_00005108-RA_Salv |
MP00195 |
GGGCAAGTTGCTGT |
SmilChr01G005911 |
Chr01 | NC_080387.1:74966429-74966442in promoter 2031-2044 bp |
- | 1957 bp upstream of target TSS | 98.0/ 100 | 3 | 74963277-74964472(-) |
SMil_00005108-RA_Salv |
MP00195 |
ACAGCAACTTGCCC |
SmilChr02G004549 |
Chr02 | NC_080388.1:68037603-68037616in promoter 35-48 bp |
- | 3953 bp upstream of target TSS | 98.0/ 100 | 3 | 68031027-68033650(-) |
SMil_00005108-RA_Salv |
MP00195 |
GGAGCAACTTGCCA |
SmilChr02G004550 |
Chr02 | NC_080388.1:68037603-68037616in promoter 1497-1510 bp |
- | 2491 bp upstream of target TSS | 98.0/ 100 | 2 | 68034096-68035112(-) |
SMil_00005108-RA_Salv |
MP00195 |
GGAGCAACTTGCCA |
SmilChr03G001423 |
Chr03 | NC_080389.1:16861666-16861679in promoter 949-962 bp |
- | 3039 bp upstream of target TSS | 98.0/ 100 | 2 | 16857776-16858627(-) |
SMil_00005108-RA_Salv |
MP00195 |
GCGCCAACTTGCCT |
SmilChr01G005215 |
Chr01 | NC_080387.1:69755434-69755447in promoter 904-917 bp |
- | 3084 bp upstream of target TSS | 98.0/ 100 | 2 | 69751850-69752350(-) |
SMil_00005108-RA_Salv |
MP00195 |
ACAGCAACTTGCCC |
SmilChr03G002786 |
Chr03 | NC_080389.1:44377627-44377640in promoter 226-239 bp |
+ | 3762 bp upstream of target TSS | 98.0/ 100 | 2 | 44370390-44373865(-) |
SMil_00005108-RA_Salv |
MP00195 |
GAGCAAGTTGCCGC |
SmilChr01G005912 |
Chr01 | NC_080387.1:74966429-74966442in promoter 3478-3491 bp |
- | 510 bp upstream of target TSS | 98.0/ 100 | 1 | 74964568-74965919(-) |
SMil_00005108-RA_Salv |
MP00195 |
ACAGCAACTTGCCC |
SmilChr01G005216 |
Chr01 | NC_080387.1:69755434-69755447in promoter 2885-2898 bp |
- | 1103 bp upstream of target TSS | 98.0/ 100 | 1 | 69753724-69754331(-) |
SMil_00005108-RA_Salv |
MP00195 |
ACAGCAACTTGCCC |
SmilChr01G004398 |
Chr01 | NC_080387.1:62117083-62117096in promoter 2147-2160 bp |
+ | 1841 bp upstream of target TSS | 98.0/ 100 | 1 | 62118937-62120651(+) |
SMil_00005108-RA_Salv |
MP00195 |
GGTGCAACTTGCCT |
SmilChr03G003738 |
Chr03 | NC_080389.1:56400327-56400340in promoter 255-268 bp |
+ | 3733 bp upstream of target TSS | 98.0/ 100 | 1 | 56389572-56396594(-) |
SMil_00005108-RA_Salv |
MP00195 |
TGGCAAGTTGCTCC |
SmilChr01G000675 |
Chr01 | NC_080387.1:14952595-14952608in promoter 3879-3892 bp |
- | 109 bp upstream of target TSS | 97.9/ 100 | 3 | 14951533-14952486(-) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCCAACTTGCCC |
SmilChr03G000053 |
Chr03 | NC_080389.1:517818-517831in promoter 1065-1078 bp |
- | 2923 bp upstream of target TSS | 97.9/ 100 | 3 | 520754-524608(+) |
SMil_00005108-RA_Salv |
MP00195 |
TTGCAAGTGGCTGC |
SmilChr01G000674 |
Chr01 | NC_080387.1:14952595-14952608in promoter 146-159 bp |
- | 3842 bp upstream of target TSS | 97.9/ 100 | 3 | 14946348-14948753(-) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCCAACTTGCCC |
SmilChr01G000596 |
Chr01 | NC_080387.1:12973719-12973732in promoter 2610-2623 bp |
+ | 1378 bp upstream of target TSS | 97.9/ 100 | 2 | 12975110-12977951(+) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCCAACTTGCCC |
SmilChr03G000050 |
Chr03 | NC_080389.1:517818-517831in promoter 544-557 bp |
- | 3444 bp upstream of target TSS | 97.9/ 100 | 2 | 510914-514374(-) |
SMil_00005108-RA_Salv |
MP00195 |
GCAGCCACTTGCAA |
SmilChr01G002922 |
Chr01 | NC_080387.1:48002643-48002656in promoter 3986-3999 bp |
+ | 2 bp upstream of target TSS | 97.9/ 100 | 1 | 48001735-48002641(-) |
SMil_00005108-RA_Salv |
MP00195 |
AGGCAAGTTGCAGC |
SmilChr03G002113 |
Chr03 | NC_080389.1:32888085-32888098in promoter 3294-3307 bp |
+ | 694 bp upstream of target TSS | 97.9/ 100 | 1 | 32887286-32887391(-) |
SMil_00005108-RA_Salv |
MP00195 |
TTGCAAGTTGCCCC |
SmilChr02G002956 |
Chr02 | NC_080388.1:50095723-50095736in promoter 3172-3185 bp |
+ | 816 bp upstream of target TSS | 97.9/ 100 | 1 | 50093535-50094907(-) |
SMil_00005108-RA_Salv |
MP00195 |
TGGCAAGTTGCCGG |