TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr03G003439; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00005108-RA_Salv SmilChr03G003439 bHLH XP_057798243.1 MP00195 TTAGCAACTTGCAT

Predicted Target Genes

9832 binding sites 6878 candidate target genes Page 1 / 138 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr02G003220 Chr02 NC_080388.1:53426503-53426516in promoter 1944-1957 bp + 2044 bp upstream of target TSS 98.9/ 100 2 53422811-53424459(-) SMil_00005108-RA_Salv MP00195 ATGCAAGTGGCCCA
SmilChr01G000839 Chr01 NC_080387.1:18134980-18134993in promoter 3155-3168 bp + 833 bp upstream of target TSS 98.8/ 100 3 18111466-18134147(-) SMil_00005108-RA_Salv MP00195 AGGCAAGTTGCCGA
SmilChr02G004720 Chr02 NC_080388.1:69455108-69455121in promoter 1779-1792 bp - 2209 bp upstream of target TSS 98.8/ 100 2 69449774-69452899(-) SMil_00005108-RA_Salv MP00195 TTGGCAACTTGCCC
SmilChr01G005806 Chr01 NC_080387.1:74110063-74110076in promoter 2642-2655 bp + 1346 bp upstream of target TSS 98.8/ 100 1 74108120-74108717(-) SMil_00005108-RA_Salv MP00195 GTGCAAGTGGCTCC
SmilChr01G003164 Chr01 NC_080387.1:50453984-50453997in promoter 1147-1160 bp + 2841 bp upstream of target TSS 98.6/ 100 5 50449264-50451143(-) SMil_00005108-RA_Salv MP00195 TTGCAAGTGGCCCA
SmilChr01G005836 Chr01 NC_080387.1:74378241-74378254in promoter 3966-3979 bp + 22 bp upstream of target TSS 98.6/ 100 1 74371627-74378219(-) SMil_00005108-RA_Salv MP00195 TTGCAAGTGGCCCA
SmilChr01G005088 Chr01 NC_080387.1:68757417-68757430in promoter 3911-3924 bp + 77 bp upstream of target TSS 98.5/ 100 1 68757507-68758834(+) SMil_00005108-RA_Salv MP00195 TCGCCAACTTGCCC
SmilChr02G002678 Chr02 NC_080388.1:46348631-46348644in promoter 3043-3056 bp + 945 bp upstream of target TSS 98.3/ 100 2 46349589-46352170(+) SMil_00005108-RA_Salv MP00195 TTGGCAACTTGCCT
SmilChr02G002674 Chr02 NC_080388.1:46335077-46335090in promoter 3577-3590 bp + 411 bp upstream of target TSS 98.3/ 100 1 46335501-46337831(+) SMil_00005108-RA_Salv MP00195 TTGGCAACTTGCCT
SmilChr02G002733 Chr02 NC_080388.1:47250943-47250956in promoter 2392-2405 bp + 1596 bp upstream of target TSS 98.3/ 100 1 47252552-47261659(+) SMil_00005108-RA_Salv MP00195 GGAGCAACTTGCCT
SmilChr02G003049 Chr02 NC_080388.1:51285521-51285534in promoter 2082-2095 bp - 1906 bp upstream of target TSS 98.3/ 100 1 51287440-51289156(+) SMil_00005108-RA_Salv MP00195 AGGCAAGTTGCTCC
SmilChr01G005812 Chr01 NC_080387.1:74131599-74131612in promoter 1685-1698 bp + 2303 bp upstream of target TSS 98.3/ 100 1 74128540-74129296(-) SMil_00005108-RA_Salv MP00195 ATGCAAGTGGCTCC
SmilChr02G000720 Chr02 NC_080388.1:11589074-11589087in promoter 938-951 bp - 3050 bp upstream of target TSS 98.3/ 100 1 11592137-11595069(+) SMil_00005108-RA_Salv MP00195 AGGCAAGTTGCTCC
SmilChr03G000333 Chr03 NC_080389.1:3774336-3774349in promoter 836-849 bp + 3152 bp upstream of target TSS 98.3/ 100 1 3777501-3780755(+) SMil_00005108-RA_Salv MP00195 GGAGCAACTTGCCT
SmilChr01G004164 Chr01 NC_080387.1:60132495-60132508in promoter 3428-3441 bp + 560 bp upstream of target TSS 98.2/ 100 2 60133068-60134915(+) SMil_00005108-RA_Salv MP00195 GCGGCAACTTGCCG
SmilChr02G002089 Chr02 NC_080388.1:37482564-37482577in promoter 2233-2246 bp + 1755 bp upstream of target TSS 98.2/ 100 2 37484332-37487742(+) SMil_00005108-RA_Salv MP00195 TCGGCAACTTGCCG
SmilChr03G001690 Chr03 NC_080389.1:22416104-22416117in promoter 3579-3592 bp + 409 bp upstream of target TSS 98.2/ 100 1 22415028-22415695(-) SMil_00005108-RA_Salv MP00195 CGGCAAGTTGCCGC
SmilChr01G004091 Chr01 NC_080387.1:59349126-59349139in promoter 2628-2641 bp - 1360 bp upstream of target TSS 98.2/ 100 1 59350499-59351367(+) SMil_00005108-RA_Salv MP00195 CGGCAAGTTGCCGC
SmilChr03G003655 Chr03 NC_080389.1:55391847-55391860in promoter 2219-2232 bp + 1769 bp upstream of target TSS 98.2/ 100 1 55388151-55390078(-) SMil_00005108-RA_Salv MP00195 CGGCAAGTTGCCGC
SmilChr02G000602 Chr02 NC_080388.1:8760134-8760147in promoter 1903-1916 bp + 2085 bp upstream of target TSS 98.2/ 100 1 8762232-8763090(+) SMil_00005108-RA_Salv MP00195 TCGGCAACTTGCCG
SmilChr03G003606 Chr03 NC_080389.1:54707125-54707138in promoter 1206-1219 bp - 2782 bp upstream of target TSS 98.2/ 100 1 54709920-54711214(+) SMil_00005108-RA_Salv MP00195 CGGCAAGTTGCCGA
SmilChr01G004909 Chr01 NC_080387.1:67123083-67123096in promoter 563-576 bp + 3425 bp upstream of target TSS 98.2/ 100 1 67126521-67126717(+) SMil_00005108-RA_Salv MP00195 GCGGCAACTTGCCG
SmilChr01G004404 Chr01 NC_080387.1:62151211-62151224in promoter 269-282 bp - 3719 bp upstream of target TSS 98.1/ 100 5 62144212-62147492(-) SMil_00005108-RA_Salv MP00195 TGGCCAACTTGCCT
SmilChr01G006057 Chr01 NC_080387.1:76032629-76032642in promoter 2656-2669 bp + 1332 bp upstream of target TSS 98.1/ 100 3 76033974-76039301(+) SMil_00005108-RA_Salv MP00195 GGGCCCACTTGCAT
SmilChr01G006056 Chr01 NC_080387.1:76032629-76032642in promoter 1666-1679 bp + 2322 bp upstream of target TSS 98.1/ 100 3 76027185-76030307(-) SMil_00005108-RA_Salv MP00195 ATGCAAGTGGGCCC
SmilChr02G003853 Chr02 NC_080388.1:60302011-60302024in promoter 1548-1561 bp - 2440 bp upstream of target TSS 98.1/ 100 2 60298047-60299571(-) SMil_00005108-RA_Salv MP00195 ACGGCCACTTGCAT
SmilChr01G005683 Chr01 NC_080387.1:73100090-73100103in promoter 891-904 bp + 3097 bp upstream of target TSS 98.1/ 100 2 73096556-73096993(-) SMil_00005108-RA_Salv MP00195 GGGCAAGTTGGCAA
SmilChr01G003536 Chr01 NC_080387.1:53983108-53983121in promoter 2996-3009 bp + 992 bp upstream of target TSS 98.1/ 100 1 53984113-53988903(+) SMil_00005108-RA_Salv MP00195 TCGCCAACTTGCCT
SmilChr01G001011 Chr01 NC_080387.1:21234963-21234976in promoter 2168-2181 bp + 1820 bp upstream of target TSS 98.0/ 100 6 21236796-21236868(+) SMil_00005108-RA_Salv MP00195 TCGGCAACTTGCTC
SmilChr01G001010 Chr01 NC_080387.1:21234963-21234976in promoter 1679-1692 bp + 2309 bp upstream of target TSS 98.0/ 100 6 21227796-21232654(-) SMil_00005108-RA_Salv MP00195 GAGCAAGTTGCCGA
SmilChr02G000885 Chr02 NC_080388.1:15257692-15257705in promoter 3798-3811 bp - 190 bp upstream of target TSS 98.0/ 100 4 15256490-15257502(-) SMil_00005108-RA_Salv MP00195 TCACCAACTTGCCC
SmilChr01G005913 Chr01 NC_080387.1:74966429-74966442in promoter 3298-3311 bp - 690 bp upstream of target TSS 98.0/ 100 3 74967132-74968905(+) SMil_00005108-RA_Salv MP00195 GGGCAAGTTGCTGT
SmilChr01G005911 Chr01 NC_080387.1:74966429-74966442in promoter 2031-2044 bp - 1957 bp upstream of target TSS 98.0/ 100 3 74963277-74964472(-) SMil_00005108-RA_Salv MP00195 ACAGCAACTTGCCC
SmilChr02G004549 Chr02 NC_080388.1:68037603-68037616in promoter 35-48 bp - 3953 bp upstream of target TSS 98.0/ 100 3 68031027-68033650(-) SMil_00005108-RA_Salv MP00195 GGAGCAACTTGCCA
SmilChr02G004550 Chr02 NC_080388.1:68037603-68037616in promoter 1497-1510 bp - 2491 bp upstream of target TSS 98.0/ 100 2 68034096-68035112(-) SMil_00005108-RA_Salv MP00195 GGAGCAACTTGCCA
SmilChr03G001423 Chr03 NC_080389.1:16861666-16861679in promoter 949-962 bp - 3039 bp upstream of target TSS 98.0/ 100 2 16857776-16858627(-) SMil_00005108-RA_Salv MP00195 GCGCCAACTTGCCT
SmilChr01G005215 Chr01 NC_080387.1:69755434-69755447in promoter 904-917 bp - 3084 bp upstream of target TSS 98.0/ 100 2 69751850-69752350(-) SMil_00005108-RA_Salv MP00195 ACAGCAACTTGCCC
SmilChr03G002786 Chr03 NC_080389.1:44377627-44377640in promoter 226-239 bp + 3762 bp upstream of target TSS 98.0/ 100 2 44370390-44373865(-) SMil_00005108-RA_Salv MP00195 GAGCAAGTTGCCGC
SmilChr01G005912 Chr01 NC_080387.1:74966429-74966442in promoter 3478-3491 bp - 510 bp upstream of target TSS 98.0/ 100 1 74964568-74965919(-) SMil_00005108-RA_Salv MP00195 ACAGCAACTTGCCC
SmilChr01G005216 Chr01 NC_080387.1:69755434-69755447in promoter 2885-2898 bp - 1103 bp upstream of target TSS 98.0/ 100 1 69753724-69754331(-) SMil_00005108-RA_Salv MP00195 ACAGCAACTTGCCC
SmilChr01G004398 Chr01 NC_080387.1:62117083-62117096in promoter 2147-2160 bp + 1841 bp upstream of target TSS 98.0/ 100 1 62118937-62120651(+) SMil_00005108-RA_Salv MP00195 GGTGCAACTTGCCT
SmilChr03G003738 Chr03 NC_080389.1:56400327-56400340in promoter 255-268 bp + 3733 bp upstream of target TSS 98.0/ 100 1 56389572-56396594(-) SMil_00005108-RA_Salv MP00195 TGGCAAGTTGCTCC
SmilChr01G000675 Chr01 NC_080387.1:14952595-14952608in promoter 3879-3892 bp - 109 bp upstream of target TSS 97.9/ 100 3 14951533-14952486(-) SMil_00005108-RA_Salv MP00195 AGGCCAACTTGCCC
SmilChr03G000053 Chr03 NC_080389.1:517818-517831in promoter 1065-1078 bp - 2923 bp upstream of target TSS 97.9/ 100 3 520754-524608(+) SMil_00005108-RA_Salv MP00195 TTGCAAGTGGCTGC
SmilChr01G000674 Chr01 NC_080387.1:14952595-14952608in promoter 146-159 bp - 3842 bp upstream of target TSS 97.9/ 100 3 14946348-14948753(-) SMil_00005108-RA_Salv MP00195 AGGCCAACTTGCCC
SmilChr01G000596 Chr01 NC_080387.1:12973719-12973732in promoter 2610-2623 bp + 1378 bp upstream of target TSS 97.9/ 100 2 12975110-12977951(+) SMil_00005108-RA_Salv MP00195 AGGCCAACTTGCCC
SmilChr03G000050 Chr03 NC_080389.1:517818-517831in promoter 544-557 bp - 3444 bp upstream of target TSS 97.9/ 100 2 510914-514374(-) SMil_00005108-RA_Salv MP00195 GCAGCCACTTGCAA
SmilChr01G002922 Chr01 NC_080387.1:48002643-48002656in promoter 3986-3999 bp + 2 bp upstream of target TSS 97.9/ 100 1 48001735-48002641(-) SMil_00005108-RA_Salv MP00195 AGGCAAGTTGCAGC
SmilChr03G002113 Chr03 NC_080389.1:32888085-32888098in promoter 3294-3307 bp + 694 bp upstream of target TSS 97.9/ 100 1 32887286-32887391(-) SMil_00005108-RA_Salv MP00195 TTGCAAGTTGCCCC
SmilChr02G002956 Chr02 NC_080388.1:50095723-50095736in promoter 3172-3185 bp + 816 bp upstream of target TSS 97.9/ 100 1 50093535-50094907(-) SMil_00005108-RA_Salv MP00195 TGGCAAGTTGCCGG