TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr07G003441; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00014538-RA_Salv SmilChr07G003441 NAC XP_057773618.1 MP00108 TTAAGTAAT

Predicted Target Genes

9810 binding sites 6458 candidate target genes Page 1 / 130 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr02G001006 Chr02 NC_080388.1:17746831-17746839in promoter 3462-3470 bp + 531 bp upstream of target TSS 100.0/ 100 6 17747370-17751640(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G004049 Chr01 NC_080387.1:58941184-58941192in promoter 3368-3376 bp + 625 bp upstream of target TSS 100.0/ 100 6 58927254-58940559(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G003667 Chr01 NC_080387.1:55095712-55095720in promoter 2304-2312 bp - 1689 bp upstream of target TSS 100.0/ 100 6 55090903-55094023(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G004376 Chr02 NC_080388.1:66121730-66121738in promoter 2078-2086 bp + 1915 bp upstream of target TSS 100.0/ 100 6 66117266-66119815(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G000092 Chr02 NC_080388.1:1201996-1202004in promoter 1821-1829 bp + 2172 bp upstream of target TSS 100.0/ 100 6 1204176-1206430(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G004377 Chr02 NC_080388.1:66122294-66122302in promoter 1609-1617 bp + 2384 bp upstream of target TSS 100.0/ 100 6 66124686-66129650(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr03G000085 Chr03 NC_080389.1:980021-980029in promoter 686-694 bp - 3307 bp upstream of target TSS 100.0/ 100 6 974330-976714(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G003698 Chr02 NC_080388.1:58442473-58442481in promoter 3909-3917 bp + 84 bp upstream of target TSS 100.0/ 100 5 58442565-58448672(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G004054 Chr01 NC_080387.1:58982757-58982765in promoter 3884-3892 bp + 109 bp upstream of target TSS 100.0/ 100 5 58982874-58984511(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G003869 Chr01 NC_080387.1:56948711-56948719in promoter 3793-3801 bp - 200 bp upstream of target TSS 100.0/ 100 5 56938006-56948511(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G000716 Chr01 NC_080387.1:16040722-16040730in promoter 3689-3697 bp - 304 bp upstream of target TSS 100.0/ 100 5 16041034-16043508(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G002167 Chr02 NC_080388.1:38872588-38872596in promoter 3419-3427 bp + 574 bp upstream of target TSS 100.0/ 100 5 38871318-38872014(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G002135 Chr02 NC_080388.1:38465610-38465618in promoter 3417-3425 bp - 576 bp upstream of target TSS 100.0/ 100 5 38464018-38465034(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G006099 Chr01 NC_080387.1:76483412-76483420in promoter 3259-3267 bp - 734 bp upstream of target TSS 100.0/ 100 5 76484154-76486020(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G001012 Chr02 NC_080388.1:17878227-17878235in promoter 3027-3035 bp + 966 bp upstream of target TSS 100.0/ 100 5 17873514-17877261(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G000229 Chr02 NC_080388.1:2970018-2970026in promoter 2481-2489 bp + 1512 bp upstream of target TSS 100.0/ 100 5 2971538-2973799(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr03G000691 Chr03 NC_080389.1:7721714-7721722in promoter 2384-2392 bp + 1609 bp upstream of target TSS 100.0/ 100 5 7723331-7725582(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G000851 Chr01 NC_080387.1:18388093-18388101in promoter 2263-2271 bp + 1730 bp upstream of target TSS 100.0/ 100 5 18382740-18386363(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G005896 Chr01 NC_080387.1:74878206-74878214in promoter 2253-2261 bp + 1740 bp upstream of target TSS 100.0/ 100 5 74879954-74880883(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G002380 Chr01 NC_080387.1:41000445-41000453in promoter 1987-1995 bp - 2006 bp upstream of target TSS 100.0/ 100 5 41002459-41005081(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr03G000110 Chr03 NC_080389.1:1213364-1213372in promoter 1978-1986 bp + 2015 bp upstream of target TSS 100.0/ 100 5 1208334-1211349(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G003406 Chr02 NC_080388.1:55231225-55231233in promoter 1830-1838 bp + 2163 bp upstream of target TSS 100.0/ 100 5 55233396-55240707(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G004978 Chr01 NC_080387.1:67836087-67836095in promoter 1689-1697 bp - 2304 bp upstream of target TSS 100.0/ 100 5 67838399-67842346(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr03G000686 Chr03 NC_080389.1:7668833-7668841in promoter 1621-1629 bp + 2372 bp upstream of target TSS 100.0/ 100 5 7671213-7673668(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G004657 Chr02 NC_080388.1:68987135-68987143in promoter 1480-1488 bp - 2513 bp upstream of target TSS 100.0/ 100 5 68983438-68984622(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G000191 Chr02 NC_080388.1:2405313-2405321in promoter 1414-1422 bp + 2579 bp upstream of target TSS 100.0/ 100 5 2400809-2402734(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G003898 Chr02 NC_080388.1:61058359-61058367in promoter 830-838 bp + 3163 bp upstream of target TSS 100.0/ 100 5 61061530-61063572(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G003853 Chr01 NC_080387.1:56809530-56809538in promoter 717-725 bp - 3276 bp upstream of target TSS 100.0/ 100 5 56802521-56806254(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G005637 Chr01 NC_080387.1:72800936-72800944in promoter 625-633 bp - 3368 bp upstream of target TSS 100.0/ 100 5 72804312-72805047(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G001903 Chr02 NC_080388.1:34342774-34342782in promoter 3975-3983 bp - 18 bp upstream of target TSS 100.0/ 100 4 34340199-34342756(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G000333 Chr01 NC_080387.1:6779520-6779528in promoter 3935-3943 bp - 58 bp upstream of target TSS 100.0/ 100 4 6779586-6783573(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G003805 Chr01 NC_080387.1:56427882-56427890in promoter 3804-3812 bp + 189 bp upstream of target TSS 100.0/ 100 4 56428079-56443511(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G004932 Chr02 NC_080388.1:71315427-71315435in promoter 3774-3782 bp + 219 bp upstream of target TSS 100.0/ 100 4 71313833-71315208(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G000092 Chr01 NC_080387.1:1659362-1659370in promoter 3751-3759 bp - 242 bp upstream of target TSS 100.0/ 100 4 1659612-1661243(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G004502 Chr02 NC_080388.1:67540690-67540698in promoter 3748-3756 bp + 245 bp upstream of target TSS 100.0/ 100 4 67528523-67540445(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G000038 Chr01 NC_080387.1:613453-613461in promoter 3729-3737 bp + 264 bp upstream of target TSS 100.0/ 100 4 611818-613189(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G000044 Chr01 NC_080387.1:712708-712716in promoter 3695-3703 bp + 298 bp upstream of target TSS 100.0/ 100 4 710815-712410(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G005422 Chr02 NC_080388.1:74683605-74683613in promoter 3685-3693 bp + 308 bp upstream of target TSS 100.0/ 100 4 74681555-74683297(-) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G005228 Chr01 NC_080387.1:69817954-69817962in promoter 3684-3692 bp - 309 bp upstream of target TSS 100.0/ 100 4 69818271-69819493(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G002613 Chr01 NC_080387.1:44396887-44396895in promoter 3637-3645 bp - 356 bp upstream of target TSS 100.0/ 100 4 44391884-44396531(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G001021 Chr01 NC_080387.1:21385472-21385480in promoter 3619-3627 bp + 374 bp upstream of target TSS 100.0/ 100 4 21385854-21388451(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr02G000214 Chr02 NC_080388.1:2777704-2777712in promoter 3539-3547 bp - 454 bp upstream of target TSS 100.0/ 100 4 2778166-2781351(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr02G005004 Chr02 NC_080388.1:71835282-71835290in promoter 3466-3474 bp - 527 bp upstream of target TSS 100.0/ 100 4 71834042-71834755(-) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G001497 Chr01 NC_080387.1:28820624-28820632in promoter 3447-3455 bp + 546 bp upstream of target TSS 100.0/ 100 4 28821178-28822257(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G003619 Chr01 NC_080387.1:54728592-54728600in promoter 3407-3415 bp + 586 bp upstream of target TSS 100.0/ 100 4 54729186-54734505(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G005942 Chr01 NC_080387.1:75155154-75155162in promoter 3389-3397 bp + 604 bp upstream of target TSS 100.0/ 100 4 75155766-75158354(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G005935 Chr01 NC_080387.1:75108125-75108133in promoter 3384-3392 bp + 609 bp upstream of target TSS 100.0/ 100 4 75108742-75111390(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G001943 Chr01 NC_080387.1:34615257-34615265in promoter 3383-3391 bp + 610 bp upstream of target TSS 100.0/ 100 4 34615875-34620087(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT
SmilChr01G001603 Chr01 NC_080387.1:30195566-30195574in promoter 3318-3326 bp - 675 bp upstream of target TSS 100.0/ 100 4 30196249-30197151(+) SMil_00014538-RA_Salv MP00108 ATTACTTAA
SmilChr01G004420 Chr01 NC_080387.1:62323403-62323411in promoter 3300-3308 bp + 693 bp upstream of target TSS 100.0/ 100 4 62324104-62326616(+) SMil_00014538-RA_Salv MP00108 TTAAGTAAT