Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr07G003441; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00014538-RA_Salv |
SmilChr07G003441 |
NAC | XP_057773618.1 |
MP00108 |
TTAAGTAAT |
9810 binding sites 6458 candidate target genes Page 1 / 130 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr02G001006 |
Chr02 | NC_080388.1:17746831-17746839in promoter 3462-3470 bp |
+ | 531 bp upstream of target TSS | 100.0/ 100 | 6 | 17747370-17751640(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G004049 |
Chr01 | NC_080387.1:58941184-58941192in promoter 3368-3376 bp |
+ | 625 bp upstream of target TSS | 100.0/ 100 | 6 | 58927254-58940559(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G003667 |
Chr01 | NC_080387.1:55095712-55095720in promoter 2304-2312 bp |
- | 1689 bp upstream of target TSS | 100.0/ 100 | 6 | 55090903-55094023(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G004376 |
Chr02 | NC_080388.1:66121730-66121738in promoter 2078-2086 bp |
+ | 1915 bp upstream of target TSS | 100.0/ 100 | 6 | 66117266-66119815(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G000092 |
Chr02 | NC_080388.1:1201996-1202004in promoter 1821-1829 bp |
+ | 2172 bp upstream of target TSS | 100.0/ 100 | 6 | 1204176-1206430(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G004377 |
Chr02 | NC_080388.1:66122294-66122302in promoter 1609-1617 bp |
+ | 2384 bp upstream of target TSS | 100.0/ 100 | 6 | 66124686-66129650(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr03G000085 |
Chr03 | NC_080389.1:980021-980029in promoter 686-694 bp |
- | 3307 bp upstream of target TSS | 100.0/ 100 | 6 | 974330-976714(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G003698 |
Chr02 | NC_080388.1:58442473-58442481in promoter 3909-3917 bp |
+ | 84 bp upstream of target TSS | 100.0/ 100 | 5 | 58442565-58448672(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G004054 |
Chr01 | NC_080387.1:58982757-58982765in promoter 3884-3892 bp |
+ | 109 bp upstream of target TSS | 100.0/ 100 | 5 | 58982874-58984511(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G003869 |
Chr01 | NC_080387.1:56948711-56948719in promoter 3793-3801 bp |
- | 200 bp upstream of target TSS | 100.0/ 100 | 5 | 56938006-56948511(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G000716 |
Chr01 | NC_080387.1:16040722-16040730in promoter 3689-3697 bp |
- | 304 bp upstream of target TSS | 100.0/ 100 | 5 | 16041034-16043508(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G002167 |
Chr02 | NC_080388.1:38872588-38872596in promoter 3419-3427 bp |
+ | 574 bp upstream of target TSS | 100.0/ 100 | 5 | 38871318-38872014(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G002135 |
Chr02 | NC_080388.1:38465610-38465618in promoter 3417-3425 bp |
- | 576 bp upstream of target TSS | 100.0/ 100 | 5 | 38464018-38465034(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G006099 |
Chr01 | NC_080387.1:76483412-76483420in promoter 3259-3267 bp |
- | 734 bp upstream of target TSS | 100.0/ 100 | 5 | 76484154-76486020(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G001012 |
Chr02 | NC_080388.1:17878227-17878235in promoter 3027-3035 bp |
+ | 966 bp upstream of target TSS | 100.0/ 100 | 5 | 17873514-17877261(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G000229 |
Chr02 | NC_080388.1:2970018-2970026in promoter 2481-2489 bp |
+ | 1512 bp upstream of target TSS | 100.0/ 100 | 5 | 2971538-2973799(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr03G000691 |
Chr03 | NC_080389.1:7721714-7721722in promoter 2384-2392 bp |
+ | 1609 bp upstream of target TSS | 100.0/ 100 | 5 | 7723331-7725582(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G000851 |
Chr01 | NC_080387.1:18388093-18388101in promoter 2263-2271 bp |
+ | 1730 bp upstream of target TSS | 100.0/ 100 | 5 | 18382740-18386363(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G005896 |
Chr01 | NC_080387.1:74878206-74878214in promoter 2253-2261 bp |
+ | 1740 bp upstream of target TSS | 100.0/ 100 | 5 | 74879954-74880883(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G002380 |
Chr01 | NC_080387.1:41000445-41000453in promoter 1987-1995 bp |
- | 2006 bp upstream of target TSS | 100.0/ 100 | 5 | 41002459-41005081(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr03G000110 |
Chr03 | NC_080389.1:1213364-1213372in promoter 1978-1986 bp |
+ | 2015 bp upstream of target TSS | 100.0/ 100 | 5 | 1208334-1211349(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G003406 |
Chr02 | NC_080388.1:55231225-55231233in promoter 1830-1838 bp |
+ | 2163 bp upstream of target TSS | 100.0/ 100 | 5 | 55233396-55240707(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G004978 |
Chr01 | NC_080387.1:67836087-67836095in promoter 1689-1697 bp |
- | 2304 bp upstream of target TSS | 100.0/ 100 | 5 | 67838399-67842346(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr03G000686 |
Chr03 | NC_080389.1:7668833-7668841in promoter 1621-1629 bp |
+ | 2372 bp upstream of target TSS | 100.0/ 100 | 5 | 7671213-7673668(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G004657 |
Chr02 | NC_080388.1:68987135-68987143in promoter 1480-1488 bp |
- | 2513 bp upstream of target TSS | 100.0/ 100 | 5 | 68983438-68984622(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G000191 |
Chr02 | NC_080388.1:2405313-2405321in promoter 1414-1422 bp |
+ | 2579 bp upstream of target TSS | 100.0/ 100 | 5 | 2400809-2402734(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G003898 |
Chr02 | NC_080388.1:61058359-61058367in promoter 830-838 bp |
+ | 3163 bp upstream of target TSS | 100.0/ 100 | 5 | 61061530-61063572(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G003853 |
Chr01 | NC_080387.1:56809530-56809538in promoter 717-725 bp |
- | 3276 bp upstream of target TSS | 100.0/ 100 | 5 | 56802521-56806254(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G005637 |
Chr01 | NC_080387.1:72800936-72800944in promoter 625-633 bp |
- | 3368 bp upstream of target TSS | 100.0/ 100 | 5 | 72804312-72805047(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G001903 |
Chr02 | NC_080388.1:34342774-34342782in promoter 3975-3983 bp |
- | 18 bp upstream of target TSS | 100.0/ 100 | 4 | 34340199-34342756(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G000333 |
Chr01 | NC_080387.1:6779520-6779528in promoter 3935-3943 bp |
- | 58 bp upstream of target TSS | 100.0/ 100 | 4 | 6779586-6783573(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G003805 |
Chr01 | NC_080387.1:56427882-56427890in promoter 3804-3812 bp |
+ | 189 bp upstream of target TSS | 100.0/ 100 | 4 | 56428079-56443511(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G004932 |
Chr02 | NC_080388.1:71315427-71315435in promoter 3774-3782 bp |
+ | 219 bp upstream of target TSS | 100.0/ 100 | 4 | 71313833-71315208(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G000092 |
Chr01 | NC_080387.1:1659362-1659370in promoter 3751-3759 bp |
- | 242 bp upstream of target TSS | 100.0/ 100 | 4 | 1659612-1661243(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G004502 |
Chr02 | NC_080388.1:67540690-67540698in promoter 3748-3756 bp |
+ | 245 bp upstream of target TSS | 100.0/ 100 | 4 | 67528523-67540445(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G000038 |
Chr01 | NC_080387.1:613453-613461in promoter 3729-3737 bp |
+ | 264 bp upstream of target TSS | 100.0/ 100 | 4 | 611818-613189(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G000044 |
Chr01 | NC_080387.1:712708-712716in promoter 3695-3703 bp |
+ | 298 bp upstream of target TSS | 100.0/ 100 | 4 | 710815-712410(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G005422 |
Chr02 | NC_080388.1:74683605-74683613in promoter 3685-3693 bp |
+ | 308 bp upstream of target TSS | 100.0/ 100 | 4 | 74681555-74683297(-) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G005228 |
Chr01 | NC_080387.1:69817954-69817962in promoter 3684-3692 bp |
- | 309 bp upstream of target TSS | 100.0/ 100 | 4 | 69818271-69819493(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G002613 |
Chr01 | NC_080387.1:44396887-44396895in promoter 3637-3645 bp |
- | 356 bp upstream of target TSS | 100.0/ 100 | 4 | 44391884-44396531(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G001021 |
Chr01 | NC_080387.1:21385472-21385480in promoter 3619-3627 bp |
+ | 374 bp upstream of target TSS | 100.0/ 100 | 4 | 21385854-21388451(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr02G000214 |
Chr02 | NC_080388.1:2777704-2777712in promoter 3539-3547 bp |
- | 454 bp upstream of target TSS | 100.0/ 100 | 4 | 2778166-2781351(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr02G005004 |
Chr02 | NC_080388.1:71835282-71835290in promoter 3466-3474 bp |
- | 527 bp upstream of target TSS | 100.0/ 100 | 4 | 71834042-71834755(-) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G001497 |
Chr01 | NC_080387.1:28820624-28820632in promoter 3447-3455 bp |
+ | 546 bp upstream of target TSS | 100.0/ 100 | 4 | 28821178-28822257(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G003619 |
Chr01 | NC_080387.1:54728592-54728600in promoter 3407-3415 bp |
+ | 586 bp upstream of target TSS | 100.0/ 100 | 4 | 54729186-54734505(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G005942 |
Chr01 | NC_080387.1:75155154-75155162in promoter 3389-3397 bp |
+ | 604 bp upstream of target TSS | 100.0/ 100 | 4 | 75155766-75158354(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G005935 |
Chr01 | NC_080387.1:75108125-75108133in promoter 3384-3392 bp |
+ | 609 bp upstream of target TSS | 100.0/ 100 | 4 | 75108742-75111390(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G001943 |
Chr01 | NC_080387.1:34615257-34615265in promoter 3383-3391 bp |
+ | 610 bp upstream of target TSS | 100.0/ 100 | 4 | 34615875-34620087(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |
SmilChr01G001603 |
Chr01 | NC_080387.1:30195566-30195574in promoter 3318-3326 bp |
- | 675 bp upstream of target TSS | 100.0/ 100 | 4 | 30196249-30197151(+) |
SMil_00014538-RA_Salv |
MP00108 |
ATTACTTAA |
SmilChr01G004420 |
Chr01 | NC_080387.1:62323403-62323411in promoter 3300-3308 bp |
+ | 693 bp upstream of target TSS | 100.0/ 100 | 4 | 62324104-62326616(+) |
SMil_00014538-RA_Salv |
MP00108 |
TTAAGTAAT |