Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr05G000619; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00006374-RA_Salv |
SmilChr05G000619 |
WRKY | XP_057764205.1 |
MP00167 |
AAAAGTCAACG |
9756 binding sites 6439 candidate target genes Page 2 / 129 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr01G005696 |
Chr01 | NC_080387.1:73231465-73231475in promoter 2278-2288 bp |
- | 1713 bp upstream of target TSS | 100.0/ 100 | 2 | 73233188-73241369(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G002850 |
Chr02 | NC_080388.1:48679882-48679892in promoter 2043-2053 bp |
+ | 1948 bp upstream of target TSS | 100.0/ 100 | 2 | 48674009-48677934(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G001749 |
Chr01 | NC_080387.1:32220203-32220213in promoter 1791-1801 bp |
+ | 2200 bp upstream of target TSS | 100.0/ 100 | 2 | 32222413-32224941(+) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr02G002963 |
Chr02 | NC_080388.1:50145718-50145728in promoter 1240-1250 bp |
+ | 2751 bp upstream of target TSS | 100.0/ 100 | 2 | 50141901-50142967(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G002786 |
Chr01 | NC_080387.1:46335173-46335183in promoter 1186-1196 bp |
+ | 2805 bp upstream of target TSS | 100.0/ 100 | 2 | 46331419-46332368(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G003060 |
Chr02 | NC_080388.1:51413161-51413171in promoter 1093-1103 bp |
- | 2898 bp upstream of target TSS | 100.0/ 100 | 2 | 51388125-51410263(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr01G002358 |
Chr01 | NC_080387.1:40754083-40754093in promoter 891-901 bp |
- | 3100 bp upstream of target TSS | 100.0/ 100 | 2 | 40757193-40758131(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G004010 |
Chr01 | NC_080387.1:58510507-58510517in promoter 838-848 bp |
- | 3153 bp upstream of target TSS | 100.0/ 100 | 2 | 58513670-58514897(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr03G000710 |
Chr03 | NC_080389.1:7885988-7885998in promoter 765-775 bp |
+ | 3226 bp upstream of target TSS | 100.0/ 100 | 2 | 7889224-7889565(+) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr03G000219 |
Chr03 | NC_080389.1:2529618-2529628in promoter 731-741 bp |
- | 3260 bp upstream of target TSS | 100.0/ 100 | 2 | 2532888-2534832(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G000788 |
Chr02 | NC_080388.1:12955975-12955985in promoter 555-565 bp |
- | 3436 bp upstream of target TSS | 100.0/ 100 | 2 | 12959421-12959777(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G003452 |
Chr01 | NC_080387.1:53090771-53090781in promoter 502-512 bp |
+ | 3489 bp upstream of target TSS | 100.0/ 100 | 2 | 53086481-53087282(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G002525 |
Chr01 | NC_080387.1:43221247-43221257in promoter 417-427 bp |
- | 3574 bp upstream of target TSS | 100.0/ 100 | 2 | 43224831-43231129(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G004771 |
Chr02 | NC_080388.1:69891711-69891721in promoter 412-422 bp |
+ | 3579 bp upstream of target TSS | 100.0/ 100 | 2 | 69880677-69888132(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G002486 |
Chr02 | NC_080388.1:43278951-43278961in promoter 304-314 bp |
- | 3687 bp upstream of target TSS | 100.0/ 100 | 2 | 43282648-43284698(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G001687 |
Chr02 | NC_080388.1:31114622-31114632in promoter 249-259 bp |
+ | 3742 bp upstream of target TSS | 100.0/ 100 | 2 | 31109680-31110880(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G004471 |
Chr01 | NC_080387.1:62805072-62805082in promoter 3695-3705 bp |
+ | 296 bp upstream of target TSS | 100.0/ 100 | 1 | 62801628-62804776(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G002760 |
Chr01 | NC_080387.1:46001255-46001265in promoter 3509-3519 bp |
- | 482 bp upstream of target TSS | 100.0/ 100 | 1 | 46001747-46006775(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G001821 |
Chr01 | NC_080387.1:33150081-33150091in promoter 3380-3390 bp |
+ | 611 bp upstream of target TSS | 100.0/ 100 | 1 | 33147058-33149470(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G002447 |
Chr01 | NC_080387.1:42064077-42064087in promoter 3262-3272 bp |
+ | 729 bp upstream of target TSS | 100.0/ 100 | 1 | 42058999-42063348(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr03G000014 |
Chr03 | NC_080389.1:142568-142578in promoter 2980-2990 bp |
+ | 1011 bp upstream of target TSS | 100.0/ 100 | 1 | 143589-147616(+) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr01G001434 |
Chr01 | NC_080387.1:28012294-28012304in promoter 2891-2901 bp |
- | 1100 bp upstream of target TSS | 100.0/ 100 | 1 | 28010553-28011194(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr02G004276 |
Chr02 | NC_080388.1:64957673-64957683in promoter 2759-2769 bp |
- | 1232 bp upstream of target TSS | 100.0/ 100 | 1 | 64954210-64956441(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr02G004329 |
Chr02 | NC_080388.1:65566659-65566669in promoter 2624-2634 bp |
- | 1367 bp upstream of target TSS | 100.0/ 100 | 1 | 65568036-65572115(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G002650 |
Chr02 | NC_080388.1:45918398-45918408in promoter 2412-2422 bp |
- | 1579 bp upstream of target TSS | 100.0/ 100 | 1 | 45914689-45916819(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr02G002605 |
Chr02 | NC_080388.1:45195185-45195195in promoter 2375-2385 bp |
- | 1616 bp upstream of target TSS | 100.0/ 100 | 1 | 45191483-45193569(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr01G002714 |
Chr01 | NC_080387.1:45400447-45400457in promoter 1992-2002 bp |
- | 1999 bp upstream of target TSS | 100.0/ 100 | 1 | 45393416-45398448(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr02G003229 |
Chr02 | NC_080388.1:53564519-53564529in promoter 1801-1811 bp |
- | 2190 bp upstream of target TSS | 100.0/ 100 | 1 | 53558021-53562329(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr01G003081 |
Chr01 | NC_080387.1:49652548-49652558in promoter 1445-1455 bp |
- | 2546 bp upstream of target TSS | 100.0/ 100 | 1 | 49647605-49650002(-) |
SMil_00006374-RA_Salv |
MP00167 |
AAAAGTCAACG |
SmilChr02G003020 |
Chr02 | NC_080388.1:50888978-50888988in promoter 1051-1061 bp |
- | 2940 bp upstream of target TSS | 100.0/ 100 | 1 | 50891928-50894781(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G003165 |
Chr02 | NC_080388.1:52687355-52687365in promoter 843-853 bp |
+ | 3148 bp upstream of target TSS | 100.0/ 100 | 1 | 52681247-52684207(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G003082 |
Chr01 | NC_080387.1:49652548-49652558in promoter 294-304 bp |
- | 3697 bp upstream of target TSS | 100.0/ 100 | 1 | 49656255-49665186(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr02G000247 |
Chr02 | NC_080388.1:3204355-3204365in promoter 59-69 bp |
+ | 3932 bp upstream of target TSS | 100.0/ 100 | 1 | 3198029-3200423(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTT |
SmilChr01G005346 |
Chr01 | NC_080387.1:70700395-70700405in promoter 2338-2348 bp |
+ | 1653 bp upstream of target TSS | 99.9/ 100 | 11 | 70702058-70714857(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G001158 |
Chr01 | NC_080387.1:23537310-23537320in promoter 2549-2559 bp |
- | 1442 bp upstream of target TSS | 99.9/ 100 | 5 | 23531645-23535868(-) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G001220 |
Chr01 | NC_080387.1:24473682-24473692in promoter 24-34 bp |
+ | 3967 bp upstream of target TSS | 99.9/ 100 | 5 | 24477659-24478409(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G002841 |
Chr01 | NC_080387.1:46982527-46982537in promoter 2945-2955 bp |
+ | 1046 bp upstream of target TSS | 99.9/ 100 | 4 | 46983583-46984509(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G003638 |
Chr01 | NC_080387.1:54870881-54870891in promoter 2933-2943 bp |
+ | 1058 bp upstream of target TSS | 99.9/ 100 | 4 | 54871949-54872876(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr02G003899 |
Chr02 | NC_080388.1:61074792-61074802in promoter 1827-1837 bp |
- | 2164 bp upstream of target TSS | 99.9/ 100 | 4 | 61076966-61079679(+) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTG |
SmilChr01G005437 |
Chr01 | NC_080387.1:71501333-71501343in promoter 1015-1025 bp |
+ | 2976 bp upstream of target TSS | 99.9/ 100 | 4 | 71504319-71509382(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G000633 |
Chr01 | NC_080387.1:14219945-14219955in promoter 515-525 bp |
+ | 3476 bp upstream of target TSS | 99.9/ 100 | 4 | 14213891-14216469(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTG |
SmilChr03G001120 |
Chr03 | NC_080389.1:12907616-12907626in promoter 3655-3665 bp |
- | 336 bp upstream of target TSS | 99.9/ 100 | 3 | 12905877-12907280(-) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr02G003926 |
Chr02 | NC_080388.1:61330666-61330676in promoter 2927-2937 bp |
+ | 1064 bp upstream of target TSS | 99.9/ 100 | 3 | 61331740-61332604(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G002291 |
Chr01 | NC_080387.1:39750174-39750184in promoter 2794-2804 bp |
+ | 1197 bp upstream of target TSS | 99.9/ 100 | 3 | 39751381-39754707(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr02G001616 |
Chr02 | NC_080388.1:30103938-30103948in promoter 554-564 bp |
+ | 3437 bp upstream of target TSS | 99.9/ 100 | 3 | 30099530-30100501(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTG |
SmilChr02G001393 |
Chr02 | NC_080388.1:26466757-26466767in promoter 3941-3951 bp |
+ | 50 bp upstream of target TSS | 99.9/ 100 | 2 | 26466817-26470187(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr02G000738 |
Chr02 | NC_080388.1:11955757-11955767in promoter 3933-3943 bp |
+ | 58 bp upstream of target TSS | 99.9/ 100 | 2 | 11952330-11955699(-) |
SMil_00006374-RA_Salv |
MP00167 |
CGTTGACTTTG |
SmilChr01G000073 |
Chr01 | NC_080387.1:1268357-1268367in promoter 2971-2981 bp |
+ | 1020 bp upstream of target TSS | 99.9/ 100 | 2 | 1269387-1271849(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr01G003610 |
Chr01 | NC_080387.1:54651358-54651368in promoter 2940-2950 bp |
+ | 1051 bp upstream of target TSS | 99.9/ 100 | 2 | 54652419-54653295(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |
SmilChr02G001418 |
Chr02 | NC_080388.1:26808068-26808078in promoter 2305-2315 bp |
+ | 1686 bp upstream of target TSS | 99.9/ 100 | 2 | 26809764-26810826(+) |
SMil_00006374-RA_Salv |
MP00167 |
CAAAGTCAACG |