TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr03G004518; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00009629-RA_Salv SmilChr03G004518 ERF XP_057799834.1 MP00529 CTCCACCGACAAAAT

Predicted Target Genes

9247 binding sites 7559 candidate target genes Page 2 / 152 Download TSV

Previous 2 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr02G005074 Chr02 NC_080388.1:72383514-72383528in promoter 2671-2685 bp - 1316 bp upstream of target TSS 98.0/ 100 1 72384844-72390199(+) SMil_00009629-RA_Salv MP00529 GTGGCGTCGGTGGCG
SmilChr05G000298 Chr05 NC_080391.1:2282947-2282961in promoter 947-961 bp - 3040 bp upstream of target TSS 98.0/ 100 1 2279826-2279907(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACATTGC
SmilChr08G004852 Chr08 NC_080394.1:57730084-57730098in promoter 932-946 bp - 3055 bp upstream of target TSS 98.0/ 100 1 57724406-57727029(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACGCCAC
SmilChr02G003645 Chr02 NC_080388.1:57823572-57823586in promoter 3436-3450 bp - 551 bp upstream of target TSS 97.9/ 100 1 57804805-57823021(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACGCCGG
SmilChr03G003388 Chr03 NC_080389.1:52256716-52256730in promoter 2910-2924 bp - 1077 bp upstream of target TSS 97.9/ 100 1 52257807-52261126(+) SMil_00009629-RA_Salv MP00529 CCGGCGTCGGTGGCG
SmilChr04G000503 Chr04 NC_080390.1:5501524-5501538in promoter 1912-1926 bp + 2075 bp upstream of target TSS 97.9/ 100 1 5495844-5499449(-) SMil_00009629-RA_Salv MP00529 CCGGCGTCGGTGGCG
SmilChr07G000467 Chr07 NC_080393.1:3278276-3278290in promoter 1565-1579 bp + 2422 bp upstream of target TSS 97.9/ 100 1 3280712-3283468(+) SMil_00009629-RA_Salv MP00529 CGCCGCCGACAATGG
SmilChr04G003282 Chr04 NC_080390.1:49493402-49493416in promoter 1245-1259 bp - 2742 bp upstream of target TSS 97.9/ 100 1 49496158-49498946(+) SMil_00009629-RA_Salv MP00529 CCGGCGTCGGTGGCG
SmilChr02G005449 Chr02 NC_080388.1:74849578-74849592in promoter 1044-1058 bp + 2943 bp upstream of target TSS 97.9/ 100 1 74843521-74846635(-) SMil_00009629-RA_Salv MP00529 CCTGTGTCGGTGGTG
SmilChr01G001815 Chr01 NC_080387.1:33098838-33098852in promoter 636-650 bp + 3351 bp upstream of target TSS 97.9/ 100 1 33093871-33095487(-) SMil_00009629-RA_Salv MP00529 CCGGCGTCGGTGGCG
SmilChr01G002308 Chr01 NC_080387.1:40010600-40010614in promoter 313-327 bp - 3674 bp upstream of target TSS 97.9/ 100 1 40014288-40021864(+) SMil_00009629-RA_Salv MP00529 GCAGCGTCGGTGGAG
SmilChr03G000444 Chr03 NC_080389.1:4767931-4767945in promoter 90-104 bp - 3897 bp upstream of target TSS 97.9/ 100 1 4760496-4764034(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACGCCGG
SmilChr01G003020 Chr01 NC_080387.1:49215228-49215242in promoter 2209-2223 bp - 1778 bp upstream of target TSS 97.8/ 100 2 49212007-49213450(-) SMil_00009629-RA_Salv MP00529 CACCACCGACGCCGC
SmilChr05G002940 Chr05 NC_080391.1:35449633-35449647in promoter 2024-2038 bp - 1963 bp upstream of target TSS 97.8/ 100 2 35451610-35454831(+) SMil_00009629-RA_Salv MP00529 GGGTTGTCGGCGGCG
SmilChr04G000338 Chr04 NC_080390.1:3116794-3116808in promoter 1612-1626 bp + 2375 bp upstream of target TSS 97.8/ 100 2 3119183-3123775(+) SMil_00009629-RA_Salv MP00529 CGCCGCCGACAATGT
SmilChr05G003331 Chr05 NC_080391.1:43703533-43703547in promoter 1108-1122 bp - 2879 bp upstream of target TSS 97.8/ 100 2 43699371-43700654(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACACTAA
SmilChr02G001464 Chr02 NC_080388.1:27365180-27365194in promoter 152-166 bp - 3835 bp upstream of target TSS 97.8/ 100 2 27360610-27361345(-) SMil_00009629-RA_Salv MP00529 CACCGCCGACAAAGC
SmilChr03G004242 Chr03 NC_080389.1:60932032-60932046in promoter 3097-3111 bp - 890 bp upstream of target TSS 97.8/ 100 1 60932936-60936598(+) SMil_00009629-RA_Salv MP00529 GCGGCGTCGGTGGTG
SmilChr03G004630 Chr03 NC_080389.1:63950925-63950939in promoter 2594-2608 bp - 1393 bp upstream of target TSS 97.8/ 100 1 63945215-63949532(-) SMil_00009629-RA_Salv MP00529 CACCACCGACACATC
SmilChr06G001422 Chr06 NC_080392.1:15017105-15017119in promoter 1828-1842 bp - 2159 bp upstream of target TSS 97.8/ 100 1 15019278-15021803(+) SMil_00009629-RA_Salv MP00529 GCTTTGTCGGCGGTG
SmilChr05G001726 Chr05 NC_080391.1:16606615-16606629in promoter 642-656 bp - 3345 bp upstream of target TSS 97.8/ 100 1 16609974-16612520(+) SMil_00009629-RA_Salv MP00529 GCGGCGTCGGTGGTG
SmilChr01G001654 Chr01 NC_080387.1:30608716-30608730in promoter 355-369 bp + 3632 bp upstream of target TSS 97.8/ 100 1 30601165-30605084(-) SMil_00009629-RA_Salv MP00529 ATGGTGTCGGTGGAG
SmilChr05G000270 Chr05 NC_080391.1:2078031-2078045in promoter 115-129 bp + 3872 bp upstream of target TSS 97.8/ 100 1 2081917-2082791(+) SMil_00009629-RA_Salv MP00529 CACCACCGACACTTC
SmilChr01G002451 Chr01 NC_080387.1:42107127-42107141in promoter 1794-1808 bp + 2193 bp upstream of target TSS 97.7/ 100 2 42096023-42104934(-) SMil_00009629-RA_Salv MP00529 GCAGTGTCGGTGGGA
SmilChr04G003982 Chr04 NC_080390.1:55257021-55257035in promoter 466-480 bp + 3521 bp upstream of target TSS 97.7/ 100 2 55260556-55264399(+) SMil_00009629-RA_Salv MP00529 CTCCGCCGACAACGT
SmilChr02G004982 Chr02 NC_080388.1:71704608-71704622in promoter 3460-3474 bp - 527 bp upstream of target TSS 97.7/ 100 1 71701068-71704081(-) SMil_00009629-RA_Salv MP00529 TCCCACCGACACTGC
SmilChr03G002852 Chr03 NC_080389.1:45113018-45113032in promoter 1446-1460 bp - 2541 bp upstream of target TSS 97.7/ 100 1 45106738-45110477(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACGCCGT
SmilChr07G004183 Chr07 NC_080393.1:53821873-53821887in promoter 1203-1217 bp - 2784 bp upstream of target TSS 97.7/ 100 1 53816357-53819089(-) SMil_00009629-RA_Salv MP00529 TCCCACCGACACTGC
SmilChr07G003311 Chr07 NC_080393.1:35143506-35143520in promoter 1062-1076 bp + 2925 bp upstream of target TSS 97.6/ 100 6 35146445-35153528(+) SMil_00009629-RA_Salv MP00529 CGCCGCCGACAAAGA
SmilChr08G002217 Chr08 NC_080394.1:20174748-20174762in promoter 3785-3799 bp - 202 bp upstream of target TSS 97.6/ 100 2 20173422-20174546(-) SMil_00009629-RA_Salv MP00529 CGCCGCCGACAAAGA
SmilChr01G003954 Chr01 NC_080387.1:57917535-57917549in promoter 511-525 bp + 3476 bp upstream of target TSS 97.6/ 100 2 57921025-57976435(+) SMil_00009629-RA_Salv MP00529 CGCCGCCGACAAAGA
SmilChr04G003502 Chr04 NC_080390.1:51425244-51425258in promoter 1561-1575 bp - 2426 bp upstream of target TSS 97.6/ 100 1 51421059-51422818(-) SMil_00009629-RA_Salv MP00529 CTCCACCGACAATGG
SmilChr07G004604 Chr07 NC_080393.1:58844115-58844129in promoter 805-819 bp - 3182 bp upstream of target TSS 97.6/ 100 1 58847311-58847955(+) SMil_00009629-RA_Salv MP00529 TGGGTGTCGGTGGCG
SmilChr01G002875 Chr01 NC_080387.1:47348956-47348970in promoter 670-684 bp - 3317 bp upstream of target TSS 97.6/ 100 1 47343786-47345639(-) SMil_00009629-RA_Salv MP00529 CGCCACCGACAACAG
SmilChr04G000355 Chr04 NC_080390.1:3414886-3414900in promoter 2682-2696 bp + 1305 bp upstream of target TSS 97.5/ 100 4 3410233-3413581(-) SMil_00009629-RA_Salv MP00529 GGTGTGTCGGTGGTG
SmilChr01G001703 Chr01 NC_080387.1:31470141-31470155in promoter 758-772 bp + 3229 bp upstream of target TSS 97.5/ 100 4 31473384-31473543(+) SMil_00009629-RA_Salv MP00529 CGCCACCGACATCGG
SmilChr04G000356 Chr04 NC_080390.1:3414886-3414900in promoter 3056-3070 bp + 931 bp upstream of target TSS 97.5/ 100 3 3413581-3413955(-) SMil_00009629-RA_Salv MP00529 GGTGTGTCGGTGGTG
SmilChr06G003254 Chr06 NC_080392.1:45211897-45211911in promoter 2719-2733 bp + 1268 bp upstream of target TSS 97.5/ 100 1 45201247-45210629(-) SMil_00009629-RA_Salv MP00529 GTGTTGTCGGTGGTG
SmilChr06G003255 Chr06 NC_080392.1:45211897-45211911in promoter 2661-2675 bp + 1326 bp upstream of target TSS 97.5/ 100 1 45213237-45218064(+) SMil_00009629-RA_Salv MP00529 CACCACCGACAACAC
SmilChr08G002376 Chr08 NC_080394.1:22554690-22554704in promoter 2346-2360 bp - 1641 bp upstream of target TSS 97.5/ 100 1 22549680-22553049(-) SMil_00009629-RA_Salv MP00529 CTCCACCGACGCCGG
SmilChr06G002991 Chr06 NC_080392.1:42745157-42745171in promoter 103-117 bp + 3884 bp upstream of target TSS 97.5/ 100 1 42731329-42741273(-) SMil_00009629-RA_Salv MP00529 GCAGCGTCGGTGGTG
SmilChr07G001328 Chr07 NC_080393.1:10217065-10217079in promoter 1993-2007 bp + 1994 bp upstream of target TSS 97.4/ 100 2 10219073-10225590(+) SMil_00009629-RA_Salv MP00529 CACCGCCGACAACAC
SmilChr02G000676 Chr02 NC_080388.1:10560224-10560238in promoter 490-504 bp - 3497 bp upstream of target TSS 97.4/ 100 2 10554034-10556727(-) SMil_00009629-RA_Salv MP00529 GCCCACCGACACTGC
SmilChr05G001184 Chr05 NC_080391.1:9939321-9939335in promoter 2927-2941 bp - 1060 bp upstream of target TSS 97.4/ 100 1 9934897-9938261(-) SMil_00009629-RA_Salv MP00529 CACCGCCGACAACAC
SmilChr01G001779 Chr01 NC_080387.1:32685446-32685460in promoter 2671-2685 bp - 1316 bp upstream of target TSS 97.4/ 100 1 32686776-32690199(+) SMil_00009629-RA_Salv MP00529 GTGTTGTCGGCGGTG
SmilChr05G001682 Chr05 NC_080391.1:15968053-15968067in promoter 1357-1371 bp - 2630 bp upstream of target TSS 97.4/ 100 1 15960996-15965423(-) SMil_00009629-RA_Salv MP00529 TGCCACCGACAATGC
SmilChr07G003023 Chr07 NC_080393.1:31270014-31270028in promoter 1243-1257 bp + 2744 bp upstream of target TSS 97.4/ 100 1 31272772-31277140(+) SMil_00009629-RA_Salv MP00529 CACCGCCGACAACAC
SmilChr02G002885 Chr02 NC_080388.1:49164222-49164236in promoter 1123-1137 bp + 2864 bp upstream of target TSS 97.4/ 100 1 49159389-49161358(-) SMil_00009629-RA_Salv MP00529 GTGGTGTCGGTGACG
SmilChr05G000838 Chr05 NC_080391.1:6611987-6612001in promoter 1059-1073 bp - 2928 bp upstream of target TSS 97.4/ 100 1 6614929-6633581(+) SMil_00009629-RA_Salv MP00529 GCGTCGTCGGTGGGG
SmilChr02G004208 Chr02 NC_080388.1:64348675-64348689in promoter 897-911 bp - 3090 bp upstream of target TSS 97.4/ 100 1 64342311-64345585(-) SMil_00009629-RA_Salv MP00529 CACCGCCGACAACAC