Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr03G004518; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00009629-RA_Salv |
SmilChr03G004518 |
ERF | XP_057799834.1 |
MP00529 |
CTCCACCGACAAAAT |
9247 binding sites 7559 candidate target genes Page 2 / 152 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr02G005074 |
Chr02 | NC_080388.1:72383514-72383528in promoter 2671-2685 bp |
- | 1316 bp upstream of target TSS | 98.0/ 100 | 1 | 72384844-72390199(+) |
SMil_00009629-RA_Salv |
MP00529 |
GTGGCGTCGGTGGCG |
SmilChr05G000298 |
Chr05 | NC_080391.1:2282947-2282961in promoter 947-961 bp |
- | 3040 bp upstream of target TSS | 98.0/ 100 | 1 | 2279826-2279907(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACATTGC |
SmilChr08G004852 |
Chr08 | NC_080394.1:57730084-57730098in promoter 932-946 bp |
- | 3055 bp upstream of target TSS | 98.0/ 100 | 1 | 57724406-57727029(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACGCCAC |
SmilChr02G003645 |
Chr02 | NC_080388.1:57823572-57823586in promoter 3436-3450 bp |
- | 551 bp upstream of target TSS | 97.9/ 100 | 1 | 57804805-57823021(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACGCCGG |
SmilChr03G003388 |
Chr03 | NC_080389.1:52256716-52256730in promoter 2910-2924 bp |
- | 1077 bp upstream of target TSS | 97.9/ 100 | 1 | 52257807-52261126(+) |
SMil_00009629-RA_Salv |
MP00529 |
CCGGCGTCGGTGGCG |
SmilChr04G000503 |
Chr04 | NC_080390.1:5501524-5501538in promoter 1912-1926 bp |
+ | 2075 bp upstream of target TSS | 97.9/ 100 | 1 | 5495844-5499449(-) |
SMil_00009629-RA_Salv |
MP00529 |
CCGGCGTCGGTGGCG |
SmilChr07G000467 |
Chr07 | NC_080393.1:3278276-3278290in promoter 1565-1579 bp |
+ | 2422 bp upstream of target TSS | 97.9/ 100 | 1 | 3280712-3283468(+) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCGCCGACAATGG |
SmilChr04G003282 |
Chr04 | NC_080390.1:49493402-49493416in promoter 1245-1259 bp |
- | 2742 bp upstream of target TSS | 97.9/ 100 | 1 | 49496158-49498946(+) |
SMil_00009629-RA_Salv |
MP00529 |
CCGGCGTCGGTGGCG |
SmilChr02G005449 |
Chr02 | NC_080388.1:74849578-74849592in promoter 1044-1058 bp |
+ | 2943 bp upstream of target TSS | 97.9/ 100 | 1 | 74843521-74846635(-) |
SMil_00009629-RA_Salv |
MP00529 |
CCTGTGTCGGTGGTG |
SmilChr01G001815 |
Chr01 | NC_080387.1:33098838-33098852in promoter 636-650 bp |
+ | 3351 bp upstream of target TSS | 97.9/ 100 | 1 | 33093871-33095487(-) |
SMil_00009629-RA_Salv |
MP00529 |
CCGGCGTCGGTGGCG |
SmilChr01G002308 |
Chr01 | NC_080387.1:40010600-40010614in promoter 313-327 bp |
- | 3674 bp upstream of target TSS | 97.9/ 100 | 1 | 40014288-40021864(+) |
SMil_00009629-RA_Salv |
MP00529 |
GCAGCGTCGGTGGAG |
SmilChr03G000444 |
Chr03 | NC_080389.1:4767931-4767945in promoter 90-104 bp |
- | 3897 bp upstream of target TSS | 97.9/ 100 | 1 | 4760496-4764034(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACGCCGG |
SmilChr01G003020 |
Chr01 | NC_080387.1:49215228-49215242in promoter 2209-2223 bp |
- | 1778 bp upstream of target TSS | 97.8/ 100 | 2 | 49212007-49213450(-) |
SMil_00009629-RA_Salv |
MP00529 |
CACCACCGACGCCGC |
SmilChr05G002940 |
Chr05 | NC_080391.1:35449633-35449647in promoter 2024-2038 bp |
- | 1963 bp upstream of target TSS | 97.8/ 100 | 2 | 35451610-35454831(+) |
SMil_00009629-RA_Salv |
MP00529 |
GGGTTGTCGGCGGCG |
SmilChr04G000338 |
Chr04 | NC_080390.1:3116794-3116808in promoter 1612-1626 bp |
+ | 2375 bp upstream of target TSS | 97.8/ 100 | 2 | 3119183-3123775(+) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCGCCGACAATGT |
SmilChr05G003331 |
Chr05 | NC_080391.1:43703533-43703547in promoter 1108-1122 bp |
- | 2879 bp upstream of target TSS | 97.8/ 100 | 2 | 43699371-43700654(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACACTAA |
SmilChr02G001464 |
Chr02 | NC_080388.1:27365180-27365194in promoter 152-166 bp |
- | 3835 bp upstream of target TSS | 97.8/ 100 | 2 | 27360610-27361345(-) |
SMil_00009629-RA_Salv |
MP00529 |
CACCGCCGACAAAGC |
SmilChr03G004242 |
Chr03 | NC_080389.1:60932032-60932046in promoter 3097-3111 bp |
- | 890 bp upstream of target TSS | 97.8/ 100 | 1 | 60932936-60936598(+) |
SMil_00009629-RA_Salv |
MP00529 |
GCGGCGTCGGTGGTG |
SmilChr03G004630 |
Chr03 | NC_080389.1:63950925-63950939in promoter 2594-2608 bp |
- | 1393 bp upstream of target TSS | 97.8/ 100 | 1 | 63945215-63949532(-) |
SMil_00009629-RA_Salv |
MP00529 |
CACCACCGACACATC |
SmilChr06G001422 |
Chr06 | NC_080392.1:15017105-15017119in promoter 1828-1842 bp |
- | 2159 bp upstream of target TSS | 97.8/ 100 | 1 | 15019278-15021803(+) |
SMil_00009629-RA_Salv |
MP00529 |
GCTTTGTCGGCGGTG |
SmilChr05G001726 |
Chr05 | NC_080391.1:16606615-16606629in promoter 642-656 bp |
- | 3345 bp upstream of target TSS | 97.8/ 100 | 1 | 16609974-16612520(+) |
SMil_00009629-RA_Salv |
MP00529 |
GCGGCGTCGGTGGTG |
SmilChr01G001654 |
Chr01 | NC_080387.1:30608716-30608730in promoter 355-369 bp |
+ | 3632 bp upstream of target TSS | 97.8/ 100 | 1 | 30601165-30605084(-) |
SMil_00009629-RA_Salv |
MP00529 |
ATGGTGTCGGTGGAG |
SmilChr05G000270 |
Chr05 | NC_080391.1:2078031-2078045in promoter 115-129 bp |
+ | 3872 bp upstream of target TSS | 97.8/ 100 | 1 | 2081917-2082791(+) |
SMil_00009629-RA_Salv |
MP00529 |
CACCACCGACACTTC |
SmilChr01G002451 |
Chr01 | NC_080387.1:42107127-42107141in promoter 1794-1808 bp |
+ | 2193 bp upstream of target TSS | 97.7/ 100 | 2 | 42096023-42104934(-) |
SMil_00009629-RA_Salv |
MP00529 |
GCAGTGTCGGTGGGA |
SmilChr04G003982 |
Chr04 | NC_080390.1:55257021-55257035in promoter 466-480 bp |
+ | 3521 bp upstream of target TSS | 97.7/ 100 | 2 | 55260556-55264399(+) |
SMil_00009629-RA_Salv |
MP00529 |
CTCCGCCGACAACGT |
SmilChr02G004982 |
Chr02 | NC_080388.1:71704608-71704622in promoter 3460-3474 bp |
- | 527 bp upstream of target TSS | 97.7/ 100 | 1 | 71701068-71704081(-) |
SMil_00009629-RA_Salv |
MP00529 |
TCCCACCGACACTGC |
SmilChr03G002852 |
Chr03 | NC_080389.1:45113018-45113032in promoter 1446-1460 bp |
- | 2541 bp upstream of target TSS | 97.7/ 100 | 1 | 45106738-45110477(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACGCCGT |
SmilChr07G004183 |
Chr07 | NC_080393.1:53821873-53821887in promoter 1203-1217 bp |
- | 2784 bp upstream of target TSS | 97.7/ 100 | 1 | 53816357-53819089(-) |
SMil_00009629-RA_Salv |
MP00529 |
TCCCACCGACACTGC |
SmilChr07G003311 |
Chr07 | NC_080393.1:35143506-35143520in promoter 1062-1076 bp |
+ | 2925 bp upstream of target TSS | 97.6/ 100 | 6 | 35146445-35153528(+) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCGCCGACAAAGA |
SmilChr08G002217 |
Chr08 | NC_080394.1:20174748-20174762in promoter 3785-3799 bp |
- | 202 bp upstream of target TSS | 97.6/ 100 | 2 | 20173422-20174546(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCGCCGACAAAGA |
SmilChr01G003954 |
Chr01 | NC_080387.1:57917535-57917549in promoter 511-525 bp |
+ | 3476 bp upstream of target TSS | 97.6/ 100 | 2 | 57921025-57976435(+) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCGCCGACAAAGA |
SmilChr04G003502 |
Chr04 | NC_080390.1:51425244-51425258in promoter 1561-1575 bp |
- | 2426 bp upstream of target TSS | 97.6/ 100 | 1 | 51421059-51422818(-) |
SMil_00009629-RA_Salv |
MP00529 |
CTCCACCGACAATGG |
SmilChr07G004604 |
Chr07 | NC_080393.1:58844115-58844129in promoter 805-819 bp |
- | 3182 bp upstream of target TSS | 97.6/ 100 | 1 | 58847311-58847955(+) |
SMil_00009629-RA_Salv |
MP00529 |
TGGGTGTCGGTGGCG |
SmilChr01G002875 |
Chr01 | NC_080387.1:47348956-47348970in promoter 670-684 bp |
- | 3317 bp upstream of target TSS | 97.6/ 100 | 1 | 47343786-47345639(-) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACAACAG |
SmilChr04G000355 |
Chr04 | NC_080390.1:3414886-3414900in promoter 2682-2696 bp |
+ | 1305 bp upstream of target TSS | 97.5/ 100 | 4 | 3410233-3413581(-) |
SMil_00009629-RA_Salv |
MP00529 |
GGTGTGTCGGTGGTG |
SmilChr01G001703 |
Chr01 | NC_080387.1:31470141-31470155in promoter 758-772 bp |
+ | 3229 bp upstream of target TSS | 97.5/ 100 | 4 | 31473384-31473543(+) |
SMil_00009629-RA_Salv |
MP00529 |
CGCCACCGACATCGG |
SmilChr04G000356 |
Chr04 | NC_080390.1:3414886-3414900in promoter 3056-3070 bp |
+ | 931 bp upstream of target TSS | 97.5/ 100 | 3 | 3413581-3413955(-) |
SMil_00009629-RA_Salv |
MP00529 |
GGTGTGTCGGTGGTG |
SmilChr06G003254 |
Chr06 | NC_080392.1:45211897-45211911in promoter 2719-2733 bp |
+ | 1268 bp upstream of target TSS | 97.5/ 100 | 1 | 45201247-45210629(-) |
SMil_00009629-RA_Salv |
MP00529 |
GTGTTGTCGGTGGTG |
SmilChr06G003255 |
Chr06 | NC_080392.1:45211897-45211911in promoter 2661-2675 bp |
+ | 1326 bp upstream of target TSS | 97.5/ 100 | 1 | 45213237-45218064(+) |
SMil_00009629-RA_Salv |
MP00529 |
CACCACCGACAACAC |
SmilChr08G002376 |
Chr08 | NC_080394.1:22554690-22554704in promoter 2346-2360 bp |
- | 1641 bp upstream of target TSS | 97.5/ 100 | 1 | 22549680-22553049(-) |
SMil_00009629-RA_Salv |
MP00529 |
CTCCACCGACGCCGG |
SmilChr06G002991 |
Chr06 | NC_080392.1:42745157-42745171in promoter 103-117 bp |
+ | 3884 bp upstream of target TSS | 97.5/ 100 | 1 | 42731329-42741273(-) |
SMil_00009629-RA_Salv |
MP00529 |
GCAGCGTCGGTGGTG |
SmilChr07G001328 |
Chr07 | NC_080393.1:10217065-10217079in promoter 1993-2007 bp |
+ | 1994 bp upstream of target TSS | 97.4/ 100 | 2 | 10219073-10225590(+) |
SMil_00009629-RA_Salv |
MP00529 |
CACCGCCGACAACAC |
SmilChr02G000676 |
Chr02 | NC_080388.1:10560224-10560238in promoter 490-504 bp |
- | 3497 bp upstream of target TSS | 97.4/ 100 | 2 | 10554034-10556727(-) |
SMil_00009629-RA_Salv |
MP00529 |
GCCCACCGACACTGC |
SmilChr05G001184 |
Chr05 | NC_080391.1:9939321-9939335in promoter 2927-2941 bp |
- | 1060 bp upstream of target TSS | 97.4/ 100 | 1 | 9934897-9938261(-) |
SMil_00009629-RA_Salv |
MP00529 |
CACCGCCGACAACAC |
SmilChr01G001779 |
Chr01 | NC_080387.1:32685446-32685460in promoter 2671-2685 bp |
- | 1316 bp upstream of target TSS | 97.4/ 100 | 1 | 32686776-32690199(+) |
SMil_00009629-RA_Salv |
MP00529 |
GTGTTGTCGGCGGTG |
SmilChr05G001682 |
Chr05 | NC_080391.1:15968053-15968067in promoter 1357-1371 bp |
- | 2630 bp upstream of target TSS | 97.4/ 100 | 1 | 15960996-15965423(-) |
SMil_00009629-RA_Salv |
MP00529 |
TGCCACCGACAATGC |
SmilChr07G003023 |
Chr07 | NC_080393.1:31270014-31270028in promoter 1243-1257 bp |
+ | 2744 bp upstream of target TSS | 97.4/ 100 | 1 | 31272772-31277140(+) |
SMil_00009629-RA_Salv |
MP00529 |
CACCGCCGACAACAC |
SmilChr02G002885 |
Chr02 | NC_080388.1:49164222-49164236in promoter 1123-1137 bp |
+ | 2864 bp upstream of target TSS | 97.4/ 100 | 1 | 49159389-49161358(-) |
SMil_00009629-RA_Salv |
MP00529 |
GTGGTGTCGGTGACG |
SmilChr05G000838 |
Chr05 | NC_080391.1:6611987-6612001in promoter 1059-1073 bp |
- | 2928 bp upstream of target TSS | 97.4/ 100 | 1 | 6614929-6633581(+) |
SMil_00009629-RA_Salv |
MP00529 |
GCGTCGTCGGTGGGG |
SmilChr02G004208 |
Chr02 | NC_080388.1:64348675-64348689in promoter 897-911 bp |
- | 3090 bp upstream of target TSS | 97.4/ 100 | 1 | 64342311-64345585(-) |
SMil_00009629-RA_Salv |
MP00529 |
CACCGCCGACAACAC |