TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr06G001111; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00023725-RA_Salv SmilChr06G001111 MYB XP_057768512.1 MP00388 AAAGTTAGGTATAA

Predicted Target Genes

9774 binding sites 6870 candidate target genes Page 1 / 138 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr01G001286 Chr01 NC_080387.1:25633163-25633176in promoter 3602-3615 bp - 386 bp upstream of target TSS 99.7/ 100 3 25633562-25634590(+) SMil_00023725-RA_Salv MP00388 CTGTACCTAACTTT
SmilChr01G006035 Chr01 NC_080387.1:75870792-75870805in promoter 2369-2382 bp - 1619 bp upstream of target TSS 99.7/ 100 2 75867731-75869173(-) SMil_00023725-RA_Salv MP00388 TAAGTTAGGTACGG
SmilChr01G006036 Chr01 NC_080387.1:75870792-75870805in promoter 3659-3672 bp - 329 bp upstream of target TSS 99.7/ 100 1 75871134-75873733(+) SMil_00023725-RA_Salv MP00388 CCGTACCTAACTTA
SmilChr01G006034 Chr01 NC_080387.1:75870792-75870805in promoter 164-177 bp - 3824 bp upstream of target TSS 99.7/ 100 1 75864334-75866968(-) SMil_00023725-RA_Salv MP00388 TAAGTTAGGTACGG
SmilChr01G004097 Chr01 NC_080387.1:59419619-59419632in promoter 2391-2404 bp - 1597 bp upstream of target TSS 99.6/ 100 2 59421229-59424877(+) SMil_00023725-RA_Salv MP00388 TTGTACCTAACTTT
SmilChr02G005557 Chr02 NC_080388.1:75535044-75535057in promoter 2590-2603 bp + 1398 bp upstream of target TSS 99.6/ 100 1 75525210-75533646(-) SMil_00023725-RA_Salv MP00388 TTGTACCTAACTTT
SmilChr02G005559 Chr02 NC_080388.1:75535044-75535057in promoter 1475-1488 bp + 2513 bp upstream of target TSS 99.6/ 100 1 75537570-75540144(+) SMil_00023725-RA_Salv MP00388 AAAGTTAGGTACAA
SmilChr02G002811 Chr02 NC_080388.1:48154800-48154813in promoter 1309-1322 bp + 2679 bp upstream of target TSS 99.3/ 100 2 48150724-48152121(-) SMil_00023725-RA_Salv MP00388 CCATACCTAACTTT
SmilChr02G000873 Chr02 NC_080388.1:15056950-15056963in promoter 2512-2525 bp + 1476 bp upstream of target TSS 99.1/ 100 4 15058439-15063644(+) SMil_00023725-RA_Salv MP00388 GAAGTTAGGTACAA
SmilChr02G004350 Chr02 NC_080388.1:65757757-65757770in promoter 683-696 bp - 3305 bp upstream of target TSS 99.0/ 100 4 65761075-65764167(+) SMil_00023725-RA_Salv MP00388 TTCTACCTAACTTT
SmilChr02G004349 Chr02 NC_080388.1:65757757-65757770in promoter 3961-3974 bp - 27 bp upstream of target TSS 99.0/ 100 2 65757797-65760619(+) SMil_00023725-RA_Salv MP00388 TTCTACCTAACTTT
SmilChr02G005496 Chr02 NC_080388.1:75121237-75121250in promoter 3243-3256 bp + 745 bp upstream of target TSS 98.9/ 100 3 75121995-75125320(+) SMil_00023725-RA_Salv MP00388 AAAGTTAGGTATAA
SmilChr03G001130 Chr03 NC_080389.1:13052702-13052715in promoter 1072-1085 bp + 2916 bp upstream of target TSS 98.9/ 100 2 13055631-13056833(+) SMil_00023725-RA_Salv MP00388 AAAGTTAGGTAAGA
SmilChr03G000455 Chr03 NC_080389.1:4847751-4847764in promoter 3392-3405 bp - 596 bp upstream of target TSS 98.9/ 100 1 4848360-4849955(+) SMil_00023725-RA_Salv MP00388 TTATACCTAACTTT
SmilChr02G000652 Chr02 NC_080388.1:9867763-9867776in promoter 1113-1126 bp + 2875 bp upstream of target TSS 98.8/ 100 2 9870651-9875685(+) SMil_00023725-RA_Salv MP00388 GAAGTTAGGTATGG
SmilChr01G004567 Chr01 NC_080387.1:63729958-63729971in promoter 308-321 bp + 3680 bp upstream of target TSS 98.8/ 100 2 63733651-63736157(+) SMil_00023725-RA_Salv MP00388 TAAGTTAGGTATGA
SmilChr01G004592 Chr01 NC_080387.1:63921375-63921388in promoter 3941-3954 bp + 47 bp upstream of target TSS 98.8/ 100 1 63921435-63922453(+) SMil_00023725-RA_Salv MP00388 TAAGTTAGGTACGT
SmilChr02G003861 Chr02 NC_080388.1:60529831-60529844in promoter 2268-2281 bp - 1720 bp upstream of target TSS 98.8/ 100 1 60531564-60532579(+) SMil_00023725-RA_Salv MP00388 CCCTACCTAACTAT
SmilChr01G004591 Chr01 NC_080387.1:63921375-63921388in promoter 721-734 bp + 3267 bp upstream of target TSS 98.8/ 100 1 63914506-63918108(-) SMil_00023725-RA_Salv MP00388 ACGTACCTAACTTA
SmilChr01G001276 Chr01 NC_080387.1:25493984-25493997in promoter 1331-1344 bp + 2657 bp upstream of target TSS 98.7/ 100 3 25496654-25497888(+) SMil_00023725-RA_Salv MP00388 AAAGTTAGGTAAAA
SmilChr02G000885 Chr02 NC_080388.1:15258793-15258806in promoter 2697-2710 bp + 1291 bp upstream of target TSS 98.7/ 100 2 15256490-15257502(-) SMil_00023725-RA_Salv MP00388 TCGTACCTAACCCT
SmilChr02G005072 Chr02 NC_080388.1:72375989-72376002in promoter 1519-1532 bp + 2469 bp upstream of target TSS 98.7/ 100 2 72378471-72381964(+) SMil_00023725-RA_Salv MP00388 TGAGTTAGGTACAA
SmilChr02G005070 Chr02 NC_080388.1:72375989-72376002in promoter 855-868 bp + 3133 bp upstream of target TSS 98.7/ 100 2 72370778-72372856(-) SMil_00023725-RA_Salv MP00388 TTGTACCTAACTCA
SmilChr02G004103 Chr02 NC_080388.1:63343608-63343621in promoter 2670-2683 bp + 1318 bp upstream of target TSS 98.7/ 100 1 63340346-63342290(-) SMil_00023725-RA_Salv MP00388 TTTTACCTAACTTT
SmilChr02G004102 Chr02 NC_080388.1:63343608-63343621in promoter 673-686 bp + 3315 bp upstream of target TSS 98.7/ 100 1 63337866-63340293(-) SMil_00023725-RA_Salv MP00388 TTTTACCTAACTTT
SmilChr01G003531 Chr01 NC_080387.1:53935592-53935605in promoter 2104-2117 bp - 1884 bp upstream of target TSS 98.6/ 100 3 53931251-53933708(-) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGGA
SmilChr02G002959 Chr02 NC_080388.1:50120437-50120450in promoter 2438-2451 bp + 1550 bp upstream of target TSS 98.6/ 100 2 50122000-50122728(+) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGGA
SmilChr02G002963 Chr02 NC_080388.1:50145370-50145383in promoter 1585-1598 bp - 2403 bp upstream of target TSS 98.6/ 100 2 50141901-50142967(-) SMil_00023725-RA_Salv MP00388 AGAGTTAGGTACGT
SmilChr02G001110 Chr02 NC_080388.1:19983303-19983316in promoter 667-680 bp + 3321 bp upstream of target TSS 98.6/ 100 2 19976745-19979982(-) SMil_00023725-RA_Salv MP00388 TCCTACCTAACTAT
SmilChr01G003624 Chr01 NC_080387.1:54797965-54797978in promoter 3819-3832 bp + 169 bp upstream of target TSS 98.6/ 100 1 54798147-54802830(+) SMil_00023725-RA_Salv MP00388 GAAGTTAGGTACGT
SmilChr01G003641 Chr01 NC_080387.1:54914755-54914768in promoter 3780-3793 bp + 208 bp upstream of target TSS 98.6/ 100 1 54914976-54919283(+) SMil_00023725-RA_Salv MP00388 GAAGTTAGGTACGT
SmilChr01G005173 Chr01 NC_080387.1:69478906-69478919in promoter 3477-3490 bp + 511 bp upstream of target TSS 98.6/ 100 1 69476337-69478395(-) SMil_00023725-RA_Salv MP00388 TCGTACCTAACATA
SmilChr02G003356 Chr02 NC_080388.1:54723537-54723550in promoter 3279-3292 bp + 709 bp upstream of target TSS 98.6/ 100 1 54724259-54726747(+) SMil_00023725-RA_Salv MP00388 AAAGTTAGGTCCGG
SmilChr01G000555 Chr01 NC_080387.1:11574705-11574718in promoter 2976-2989 bp + 1012 bp upstream of target TSS 98.6/ 100 1 11571615-11573693(-) SMil_00023725-RA_Salv MP00388 TCCTACCTAACTAT
SmilChr03G001958 Chr03 NC_080389.1:27994422-27994435in promoter 2800-2813 bp - 1188 bp upstream of target TSS 98.6/ 100 1 27992014-27993234(-) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGGA
SmilChr01G000576 Chr01 NC_080387.1:11986014-11986027in promoter 2717-2730 bp + 1271 bp upstream of target TSS 98.6/ 100 1 11987298-11989109(+) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGGA
SmilChr01G000834 Chr01 NC_080387.1:18019161-18019174in promoter 2643-2656 bp - 1345 bp upstream of target TSS 98.6/ 100 1 18020519-18023491(+) SMil_00023725-RA_Salv MP00388 TCCTACCTAACTAT
SmilChr01G001464 Chr01 NC_080387.1:28442281-28442294in promoter 2329-2342 bp - 1659 bp upstream of target TSS 98.6/ 100 1 28438186-28440622(-) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGGA
SmilChr01G003418 Chr01 NC_080387.1:52814328-52814341in promoter 917-930 bp - 3071 bp upstream of target TSS 98.6/ 100 1 52817412-52823614(+) SMil_00023725-RA_Salv MP00388 ACGTACCTAACTCT
SmilChr02G000853 Chr02 NC_080388.1:14527009-14527022in promoter 860-873 bp + 3128 bp upstream of target TSS 98.6/ 100 1 14530150-14530911(+) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGGA
SmilChr03G002331 Chr03 NC_080389.1:36775147-36775160in promoter 645-658 bp + 3343 bp upstream of target TSS 98.6/ 100 1 36770655-36771804(-) SMil_00023725-RA_Salv MP00388 TCCTACCTAACTAT
SmilChr02G004687 Chr02 NC_080388.1:69196660-69196673in promoter 570-583 bp - 3418 bp upstream of target TSS 98.6/ 100 1 69190049-69193242(-) SMil_00023725-RA_Salv MP00388 AAAGTTAGGTCCGG
SmilChr02G001357 Chr02 NC_080388.1:25349733-25349746in promoter 531-544 bp - 3457 bp upstream of target TSS 98.6/ 100 1 25353203-25354734(+) SMil_00023725-RA_Salv MP00388 TCCTACCTAACTAT
SmilChr01G001402 Chr01 NC_080387.1:27591709-27591722in promoter 3253-3266 bp - 735 bp upstream of target TSS 98.5/ 100 3 27589426-27590974(-) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTATGA
SmilChr03G000265 Chr03 NC_080389.1:3072184-3072197in promoter 350-363 bp - 3638 bp upstream of target TSS 98.5/ 100 2 3065973-3068546(-) SMil_00023725-RA_Salv MP00388 TGAGTTAGGTATGG
SmilChr01G003505 Chr01 NC_080387.1:53630035-53630048in promoter 3034-3047 bp + 954 bp upstream of target TSS 98.5/ 100 1 53631002-53633454(+) SMil_00023725-RA_Salv MP00388 TGAGTTAGGTATGG
SmilChr03G001294 Chr03 NC_080389.1:15150309-15150322in promoter 2822-2835 bp + 1166 bp upstream of target TSS 98.5/ 100 1 15132815-15149143(-) SMil_00023725-RA_Salv MP00388 GTGTACCTAACTTC
SmilChr01G005013 Chr01 NC_080387.1:68147093-68147106in promoter 1670-1683 bp - 2318 bp upstream of target TSS 98.5/ 100 1 68141937-68144775(-) SMil_00023725-RA_Salv MP00388 GAAGTTAGGTAGAA
SmilChr02G001712 Chr02 NC_080388.1:31516418-31516431in promoter 1533-1546 bp + 2455 bp upstream of target TSS 98.4/ 100 3 31512651-31513963(-) SMil_00023725-RA_Salv MP00388 ATGTACCTAACTTC
SmilChr02G001077 Chr02 NC_080388.1:19303108-19303121in promoter 1373-1386 bp + 2615 bp upstream of target TSS 98.4/ 100 3 19305736-19307784(+) SMil_00023725-RA_Salv MP00388 ATAGTTAGGTAGAA