Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr06G001111; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00023725-RA_Salv |
SmilChr06G001111 |
MYB | XP_057768512.1 |
MP00388 |
AAAGTTAGGTATAA |
9774 binding sites 6870 candidate target genes Page 1 / 138 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr01G001286 |
Chr01 | NC_080387.1:25633163-25633176in promoter 3602-3615 bp |
- | 386 bp upstream of target TSS | 99.7/ 100 | 3 | 25633562-25634590(+) |
SMil_00023725-RA_Salv |
MP00388 |
CTGTACCTAACTTT |
SmilChr01G006035 |
Chr01 | NC_080387.1:75870792-75870805in promoter 2369-2382 bp |
- | 1619 bp upstream of target TSS | 99.7/ 100 | 2 | 75867731-75869173(-) |
SMil_00023725-RA_Salv |
MP00388 |
TAAGTTAGGTACGG |
SmilChr01G006036 |
Chr01 | NC_080387.1:75870792-75870805in promoter 3659-3672 bp |
- | 329 bp upstream of target TSS | 99.7/ 100 | 1 | 75871134-75873733(+) |
SMil_00023725-RA_Salv |
MP00388 |
CCGTACCTAACTTA |
SmilChr01G006034 |
Chr01 | NC_080387.1:75870792-75870805in promoter 164-177 bp |
- | 3824 bp upstream of target TSS | 99.7/ 100 | 1 | 75864334-75866968(-) |
SMil_00023725-RA_Salv |
MP00388 |
TAAGTTAGGTACGG |
SmilChr01G004097 |
Chr01 | NC_080387.1:59419619-59419632in promoter 2391-2404 bp |
- | 1597 bp upstream of target TSS | 99.6/ 100 | 2 | 59421229-59424877(+) |
SMil_00023725-RA_Salv |
MP00388 |
TTGTACCTAACTTT |
SmilChr02G005557 |
Chr02 | NC_080388.1:75535044-75535057in promoter 2590-2603 bp |
+ | 1398 bp upstream of target TSS | 99.6/ 100 | 1 | 75525210-75533646(-) |
SMil_00023725-RA_Salv |
MP00388 |
TTGTACCTAACTTT |
SmilChr02G005559 |
Chr02 | NC_080388.1:75535044-75535057in promoter 1475-1488 bp |
+ | 2513 bp upstream of target TSS | 99.6/ 100 | 1 | 75537570-75540144(+) |
SMil_00023725-RA_Salv |
MP00388 |
AAAGTTAGGTACAA |
SmilChr02G002811 |
Chr02 | NC_080388.1:48154800-48154813in promoter 1309-1322 bp |
+ | 2679 bp upstream of target TSS | 99.3/ 100 | 2 | 48150724-48152121(-) |
SMil_00023725-RA_Salv |
MP00388 |
CCATACCTAACTTT |
SmilChr02G000873 |
Chr02 | NC_080388.1:15056950-15056963in promoter 2512-2525 bp |
+ | 1476 bp upstream of target TSS | 99.1/ 100 | 4 | 15058439-15063644(+) |
SMil_00023725-RA_Salv |
MP00388 |
GAAGTTAGGTACAA |
SmilChr02G004350 |
Chr02 | NC_080388.1:65757757-65757770in promoter 683-696 bp |
- | 3305 bp upstream of target TSS | 99.0/ 100 | 4 | 65761075-65764167(+) |
SMil_00023725-RA_Salv |
MP00388 |
TTCTACCTAACTTT |
SmilChr02G004349 |
Chr02 | NC_080388.1:65757757-65757770in promoter 3961-3974 bp |
- | 27 bp upstream of target TSS | 99.0/ 100 | 2 | 65757797-65760619(+) |
SMil_00023725-RA_Salv |
MP00388 |
TTCTACCTAACTTT |
SmilChr02G005496 |
Chr02 | NC_080388.1:75121237-75121250in promoter 3243-3256 bp |
+ | 745 bp upstream of target TSS | 98.9/ 100 | 3 | 75121995-75125320(+) |
SMil_00023725-RA_Salv |
MP00388 |
AAAGTTAGGTATAA |
SmilChr03G001130 |
Chr03 | NC_080389.1:13052702-13052715in promoter 1072-1085 bp |
+ | 2916 bp upstream of target TSS | 98.9/ 100 | 2 | 13055631-13056833(+) |
SMil_00023725-RA_Salv |
MP00388 |
AAAGTTAGGTAAGA |
SmilChr03G000455 |
Chr03 | NC_080389.1:4847751-4847764in promoter 3392-3405 bp |
- | 596 bp upstream of target TSS | 98.9/ 100 | 1 | 4848360-4849955(+) |
SMil_00023725-RA_Salv |
MP00388 |
TTATACCTAACTTT |
SmilChr02G000652 |
Chr02 | NC_080388.1:9867763-9867776in promoter 1113-1126 bp |
+ | 2875 bp upstream of target TSS | 98.8/ 100 | 2 | 9870651-9875685(+) |
SMil_00023725-RA_Salv |
MP00388 |
GAAGTTAGGTATGG |
SmilChr01G004567 |
Chr01 | NC_080387.1:63729958-63729971in promoter 308-321 bp |
+ | 3680 bp upstream of target TSS | 98.8/ 100 | 2 | 63733651-63736157(+) |
SMil_00023725-RA_Salv |
MP00388 |
TAAGTTAGGTATGA |
SmilChr01G004592 |
Chr01 | NC_080387.1:63921375-63921388in promoter 3941-3954 bp |
+ | 47 bp upstream of target TSS | 98.8/ 100 | 1 | 63921435-63922453(+) |
SMil_00023725-RA_Salv |
MP00388 |
TAAGTTAGGTACGT |
SmilChr02G003861 |
Chr02 | NC_080388.1:60529831-60529844in promoter 2268-2281 bp |
- | 1720 bp upstream of target TSS | 98.8/ 100 | 1 | 60531564-60532579(+) |
SMil_00023725-RA_Salv |
MP00388 |
CCCTACCTAACTAT |
SmilChr01G004591 |
Chr01 | NC_080387.1:63921375-63921388in promoter 721-734 bp |
+ | 3267 bp upstream of target TSS | 98.8/ 100 | 1 | 63914506-63918108(-) |
SMil_00023725-RA_Salv |
MP00388 |
ACGTACCTAACTTA |
SmilChr01G001276 |
Chr01 | NC_080387.1:25493984-25493997in promoter 1331-1344 bp |
+ | 2657 bp upstream of target TSS | 98.7/ 100 | 3 | 25496654-25497888(+) |
SMil_00023725-RA_Salv |
MP00388 |
AAAGTTAGGTAAAA |
SmilChr02G000885 |
Chr02 | NC_080388.1:15258793-15258806in promoter 2697-2710 bp |
+ | 1291 bp upstream of target TSS | 98.7/ 100 | 2 | 15256490-15257502(-) |
SMil_00023725-RA_Salv |
MP00388 |
TCGTACCTAACCCT |
SmilChr02G005072 |
Chr02 | NC_080388.1:72375989-72376002in promoter 1519-1532 bp |
+ | 2469 bp upstream of target TSS | 98.7/ 100 | 2 | 72378471-72381964(+) |
SMil_00023725-RA_Salv |
MP00388 |
TGAGTTAGGTACAA |
SmilChr02G005070 |
Chr02 | NC_080388.1:72375989-72376002in promoter 855-868 bp |
+ | 3133 bp upstream of target TSS | 98.7/ 100 | 2 | 72370778-72372856(-) |
SMil_00023725-RA_Salv |
MP00388 |
TTGTACCTAACTCA |
SmilChr02G004103 |
Chr02 | NC_080388.1:63343608-63343621in promoter 2670-2683 bp |
+ | 1318 bp upstream of target TSS | 98.7/ 100 | 1 | 63340346-63342290(-) |
SMil_00023725-RA_Salv |
MP00388 |
TTTTACCTAACTTT |
SmilChr02G004102 |
Chr02 | NC_080388.1:63343608-63343621in promoter 673-686 bp |
+ | 3315 bp upstream of target TSS | 98.7/ 100 | 1 | 63337866-63340293(-) |
SMil_00023725-RA_Salv |
MP00388 |
TTTTACCTAACTTT |
SmilChr01G003531 |
Chr01 | NC_080387.1:53935592-53935605in promoter 2104-2117 bp |
- | 1884 bp upstream of target TSS | 98.6/ 100 | 3 | 53931251-53933708(-) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGGA |
SmilChr02G002959 |
Chr02 | NC_080388.1:50120437-50120450in promoter 2438-2451 bp |
+ | 1550 bp upstream of target TSS | 98.6/ 100 | 2 | 50122000-50122728(+) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGGA |
SmilChr02G002963 |
Chr02 | NC_080388.1:50145370-50145383in promoter 1585-1598 bp |
- | 2403 bp upstream of target TSS | 98.6/ 100 | 2 | 50141901-50142967(-) |
SMil_00023725-RA_Salv |
MP00388 |
AGAGTTAGGTACGT |
SmilChr02G001110 |
Chr02 | NC_080388.1:19983303-19983316in promoter 667-680 bp |
+ | 3321 bp upstream of target TSS | 98.6/ 100 | 2 | 19976745-19979982(-) |
SMil_00023725-RA_Salv |
MP00388 |
TCCTACCTAACTAT |
SmilChr01G003624 |
Chr01 | NC_080387.1:54797965-54797978in promoter 3819-3832 bp |
+ | 169 bp upstream of target TSS | 98.6/ 100 | 1 | 54798147-54802830(+) |
SMil_00023725-RA_Salv |
MP00388 |
GAAGTTAGGTACGT |
SmilChr01G003641 |
Chr01 | NC_080387.1:54914755-54914768in promoter 3780-3793 bp |
+ | 208 bp upstream of target TSS | 98.6/ 100 | 1 | 54914976-54919283(+) |
SMil_00023725-RA_Salv |
MP00388 |
GAAGTTAGGTACGT |
SmilChr01G005173 |
Chr01 | NC_080387.1:69478906-69478919in promoter 3477-3490 bp |
+ | 511 bp upstream of target TSS | 98.6/ 100 | 1 | 69476337-69478395(-) |
SMil_00023725-RA_Salv |
MP00388 |
TCGTACCTAACATA |
SmilChr02G003356 |
Chr02 | NC_080388.1:54723537-54723550in promoter 3279-3292 bp |
+ | 709 bp upstream of target TSS | 98.6/ 100 | 1 | 54724259-54726747(+) |
SMil_00023725-RA_Salv |
MP00388 |
AAAGTTAGGTCCGG |
SmilChr01G000555 |
Chr01 | NC_080387.1:11574705-11574718in promoter 2976-2989 bp |
+ | 1012 bp upstream of target TSS | 98.6/ 100 | 1 | 11571615-11573693(-) |
SMil_00023725-RA_Salv |
MP00388 |
TCCTACCTAACTAT |
SmilChr03G001958 |
Chr03 | NC_080389.1:27994422-27994435in promoter 2800-2813 bp |
- | 1188 bp upstream of target TSS | 98.6/ 100 | 1 | 27992014-27993234(-) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGGA |
SmilChr01G000576 |
Chr01 | NC_080387.1:11986014-11986027in promoter 2717-2730 bp |
+ | 1271 bp upstream of target TSS | 98.6/ 100 | 1 | 11987298-11989109(+) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGGA |
SmilChr01G000834 |
Chr01 | NC_080387.1:18019161-18019174in promoter 2643-2656 bp |
- | 1345 bp upstream of target TSS | 98.6/ 100 | 1 | 18020519-18023491(+) |
SMil_00023725-RA_Salv |
MP00388 |
TCCTACCTAACTAT |
SmilChr01G001464 |
Chr01 | NC_080387.1:28442281-28442294in promoter 2329-2342 bp |
- | 1659 bp upstream of target TSS | 98.6/ 100 | 1 | 28438186-28440622(-) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGGA |
SmilChr01G003418 |
Chr01 | NC_080387.1:52814328-52814341in promoter 917-930 bp |
- | 3071 bp upstream of target TSS | 98.6/ 100 | 1 | 52817412-52823614(+) |
SMil_00023725-RA_Salv |
MP00388 |
ACGTACCTAACTCT |
SmilChr02G000853 |
Chr02 | NC_080388.1:14527009-14527022in promoter 860-873 bp |
+ | 3128 bp upstream of target TSS | 98.6/ 100 | 1 | 14530150-14530911(+) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGGA |
SmilChr03G002331 |
Chr03 | NC_080389.1:36775147-36775160in promoter 645-658 bp |
+ | 3343 bp upstream of target TSS | 98.6/ 100 | 1 | 36770655-36771804(-) |
SMil_00023725-RA_Salv |
MP00388 |
TCCTACCTAACTAT |
SmilChr02G004687 |
Chr02 | NC_080388.1:69196660-69196673in promoter 570-583 bp |
- | 3418 bp upstream of target TSS | 98.6/ 100 | 1 | 69190049-69193242(-) |
SMil_00023725-RA_Salv |
MP00388 |
AAAGTTAGGTCCGG |
SmilChr02G001357 |
Chr02 | NC_080388.1:25349733-25349746in promoter 531-544 bp |
- | 3457 bp upstream of target TSS | 98.6/ 100 | 1 | 25353203-25354734(+) |
SMil_00023725-RA_Salv |
MP00388 |
TCCTACCTAACTAT |
SmilChr01G001402 |
Chr01 | NC_080387.1:27591709-27591722in promoter 3253-3266 bp |
- | 735 bp upstream of target TSS | 98.5/ 100 | 3 | 27589426-27590974(-) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTATGA |
SmilChr03G000265 |
Chr03 | NC_080389.1:3072184-3072197in promoter 350-363 bp |
- | 3638 bp upstream of target TSS | 98.5/ 100 | 2 | 3065973-3068546(-) |
SMil_00023725-RA_Salv |
MP00388 |
TGAGTTAGGTATGG |
SmilChr01G003505 |
Chr01 | NC_080387.1:53630035-53630048in promoter 3034-3047 bp |
+ | 954 bp upstream of target TSS | 98.5/ 100 | 1 | 53631002-53633454(+) |
SMil_00023725-RA_Salv |
MP00388 |
TGAGTTAGGTATGG |
SmilChr03G001294 |
Chr03 | NC_080389.1:15150309-15150322in promoter 2822-2835 bp |
+ | 1166 bp upstream of target TSS | 98.5/ 100 | 1 | 15132815-15149143(-) |
SMil_00023725-RA_Salv |
MP00388 |
GTGTACCTAACTTC |
SmilChr01G005013 |
Chr01 | NC_080387.1:68147093-68147106in promoter 1670-1683 bp |
- | 2318 bp upstream of target TSS | 98.5/ 100 | 1 | 68141937-68144775(-) |
SMil_00023725-RA_Salv |
MP00388 |
GAAGTTAGGTAGAA |
SmilChr02G001712 |
Chr02 | NC_080388.1:31516418-31516431in promoter 1533-1546 bp |
+ | 2455 bp upstream of target TSS | 98.4/ 100 | 3 | 31512651-31513963(-) |
SMil_00023725-RA_Salv |
MP00388 |
ATGTACCTAACTTC |
SmilChr02G001077 |
Chr02 | NC_080388.1:19303108-19303121in promoter 1373-1386 bp |
+ | 2615 bp upstream of target TSS | 98.4/ 100 | 3 | 19305736-19307784(+) |
SMil_00023725-RA_Salv |
MP00388 |
ATAGTTAGGTAGAA |