TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr07G004480; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00029285-RA_Salv SmilChr07G004480 WRKY XP_057776222.1 MP00531 CTTTGACTTTTTT

Predicted Target Genes

9784 binding sites 6663 candidate target genes Page 1 / 134 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr02G004276 Chr02 NC_080388.1:64957673-64957685in promoter 2757-2769 bp + 1232 bp upstream of target TSS 100.0/ 100 4 64954210-64956441(-) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAACG
SmilChr02G003714 Chr02 NC_080388.1:58747087-58747099in promoter 345-357 bp - 3644 bp upstream of target TSS 100.0/ 100 3 58741135-58743443(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTC
SmilChr02G005108 Chr02 NC_080388.1:72595163-72595175in promoter 3790-3802 bp + 199 bp upstream of target TSS 99.7/ 100 4 72591050-72594964(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAACG
SmilChr01G001434 Chr01 NC_080387.1:28012294-28012306in promoter 2889-2901 bp + 1100 bp upstream of target TSS 99.7/ 100 2 28010553-28011194(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAACG
SmilChr03G000219 Chr03 NC_080389.1:2529618-2529630in promoter 731-743 bp + 3258 bp upstream of target TSS 99.7/ 100 2 2532888-2534832(+) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTT
SmilChr03G000709 Chr03 NC_080389.1:7885986-7885998in promoter 3607-3619 bp - 382 bp upstream of target TSS 99.7/ 100 1 7878409-7885604(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTT
SmilChr01G005847 Chr01 NC_080387.1:74436929-74436941in promoter 2509-2521 bp - 1480 bp upstream of target TSS 99.7/ 100 1 74432516-74435449(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTT
SmilChr03G000710 Chr03 NC_080389.1:7885986-7885998in promoter 763-775 bp - 3226 bp upstream of target TSS 99.7/ 100 1 7889224-7889565(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAACG
SmilChr03G001261 Chr03 NC_080389.1:14556947-14556959in promoter 2974-2986 bp - 1015 bp upstream of target TSS 99.4/ 100 5 14545865-14555932(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTG
SmilChr02G001749 Chr02 NC_080388.1:32106559-32106571in promoter 1476-1488 bp + 2513 bp upstream of target TSS 99.4/ 100 4 32109084-32110010(+) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTG
SmilChr02G001687 Chr02 NC_080388.1:31114620-31114632in promoter 249-261 bp - 3740 bp upstream of target TSS 99.4/ 100 2 31109680-31110880(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTG
SmilChr02G001688 Chr02 NC_080388.1:31114620-31114632in promoter 1510-1522 bp - 2479 bp upstream of target TSS 99.4/ 100 1 31111086-31112141(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTG
SmilChr01G000971 Chr01 NC_080387.1:20582252-20582264in promoter 2762-2774 bp + 1227 bp upstream of target TSS 99.3/ 100 3 20571972-20581025(-) SMil_00029285-RA_Salv MP00531 GGAAAAGTCAACG
SmilChr01G001065 Chr01 NC_080387.1:22009496-22009508in promoter 2039-2051 bp - 1950 bp upstream of target TSS 99.3/ 100 3 22002683-22007546(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTCC
SmilChr02G002963 Chr02 NC_080388.1:50145716-50145728in promoter 1240-1252 bp - 2749 bp upstream of target TSS 99.1/ 100 3 50141901-50142967(-) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTA
SmilChr02G000642 Chr02 NC_080388.1:9707434-9707446in promoter 855-867 bp + 3134 bp upstream of target TSS 99.1/ 100 2 9710580-9716954(+) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTGT
SmilChr02G004329 Chr02 NC_080388.1:65566659-65566671in promoter 2624-2636 bp + 1365 bp upstream of target TSS 99.1/ 100 1 65568036-65572115(+) SMil_00029285-RA_Salv MP00531 CGTTGACTTTTTA
SmilChr02G005499 Chr02 NC_080388.1:75139489-75139501in promoter 3295-3307 bp + 694 bp upstream of target TSS 99.0/ 100 3 75140195-75145256(+) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr03G000288 Chr03 NC_080389.1:3271930-3271942in promoter 3224-3236 bp - 765 bp upstream of target TSS 99.0/ 100 3 3266456-3271165(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr01G002688 Chr01 NC_080387.1:45108459-45108471in promoter 2446-2458 bp + 1543 bp upstream of target TSS 99.0/ 100 3 45104700-45106916(-) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAAAG
SmilChr01G000975 Chr01 NC_080387.1:20604085-20604097in promoter 3866-3878 bp + 123 bp upstream of target TSS 99.0/ 100 2 20601292-20603962(-) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAAAG
SmilChr01G002295 Chr01 NC_080387.1:39776916-39776928in promoter 2203-2215 bp + 1786 bp upstream of target TSS 99.0/ 100 2 39778714-39782298(+) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr02G004521 Chr02 NC_080388.1:67738501-67738513in promoter 1887-1899 bp - 2102 bp upstream of target TSS 99.0/ 100 2 67734728-67736399(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr01G002139 Chr01 NC_080387.1:37374701-37374713in promoter 1273-1285 bp - 2716 bp upstream of target TSS 99.0/ 100 2 37377429-37378289(+) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAAAG
SmilChr02G002537 Chr02 NC_080388.1:44157774-44157786in promoter 3402-3414 bp - 587 bp upstream of target TSS 99.0/ 100 1 44154115-44157187(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr03G000100 Chr03 NC_080389.1:1117383-1117395in promoter 3381-3393 bp - 608 bp upstream of target TSS 99.0/ 100 1 1114004-1116775(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr01G001323 Chr01 NC_080387.1:26264406-26264418in promoter 3183-3195 bp - 806 bp upstream of target TSS 99.0/ 100 1 26265224-26266468(+) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAAAG
SmilChr01G000170 Chr01 NC_080387.1:2800035-2800047in promoter 3146-3158 bp + 843 bp upstream of target TSS 99.0/ 100 1 2800890-2804009(+) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTC
SmilChr02G002538 Chr02 NC_080388.1:44157774-44157786in promoter 1868-1880 bp - 2121 bp upstream of target TSS 99.0/ 100 1 44159907-44165662(+) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAAAG
SmilChr01G000974 Chr01 NC_080387.1:20604085-20604097in promoter 753-765 bp + 3236 bp upstream of target TSS 99.0/ 100 1 20596198-20600849(-) SMil_00029285-RA_Salv MP00531 GAAAAAGTCAAAG
SmilChr02G004332 Chr02 NC_080388.1:65590314-65590326in promoter 3526-3538 bp - 463 bp upstream of target TSS 98.8/ 100 4 65590789-65592409(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr02G000737 Chr02 NC_080388.1:11950625-11950637in promoter 2753-2765 bp - 1236 bp upstream of target TSS 98.8/ 100 4 11948946-11949389(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr02G001431 Chr02 NC_080388.1:27014791-27014803in promoter 1588-1600 bp + 2401 bp upstream of target TSS 98.8/ 100 4 27008909-27012390(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr01G005674 Chr01 NC_080387.1:73014496-73014508in promoter 233-245 bp + 3756 bp upstream of target TSS 98.8/ 100 4 73018264-73019041(+) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr01G001165 Chr01 NC_080387.1:23673443-23673455in promoter 3896-3908 bp + 93 bp upstream of target TSS 98.8/ 100 3 23673548-23687383(+) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr02G000765 Chr02 NC_080388.1:12522208-12522220in promoter 3570-3582 bp + 419 bp upstream of target TSS 98.8/ 100 3 12517283-12521789(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr02G004331 Chr02 NC_080388.1:65590314-65590326in promoter 3561-3573 bp - 428 bp upstream of target TSS 98.8/ 100 3 65584992-65589886(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr02G001644 Chr02 NC_080388.1:30513788-30513800in promoter 3546-3558 bp - 443 bp upstream of target TSS 98.8/ 100 3 30514243-30517005(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr02G004921 Chr02 NC_080388.1:71238684-71238696in promoter 3356-3368 bp - 633 bp upstream of target TSS 98.8/ 100 3 71239329-71241467(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr02G002868 Chr02 NC_080388.1:48875923-48875935in promoter 2541-2553 bp - 1448 bp upstream of target TSS 98.8/ 100 3 48877383-48880617(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr01G004612 Chr01 NC_080387.1:64082925-64082937in promoter 2073-2085 bp + 1916 bp upstream of target TSS 98.8/ 100 3 64076344-64081009(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr01G003603 Chr01 NC_080387.1:54577335-54577347in promoter 1780-1792 bp - 2209 bp upstream of target TSS 98.8/ 100 3 54579556-54580784(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr01G002417 Chr01 NC_080387.1:41587382-41587394in promoter 1765-1777 bp + 2224 bp upstream of target TSS 98.8/ 100 3 41561379-41585158(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr02G001483 Chr02 NC_080388.1:27814269-27814281in promoter 1232-1244 bp + 2757 bp upstream of target TSS 98.8/ 100 3 27807831-27811512(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr01G003686 Chr01 NC_080387.1:55243510-55243522in promoter 501-513 bp - 3488 bp upstream of target TSS 98.8/ 100 3 55238048-55240022(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr01G002753 Chr01 NC_080387.1:45853805-45853817in promoter 304-316 bp - 3685 bp upstream of target TSS 98.8/ 100 3 45847328-45850120(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr01G002122 Chr01 NC_080387.1:37225505-37225517in promoter 3792-3804 bp - 197 bp upstream of target TSS 98.8/ 100 2 37222854-37225308(-) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr02G005049 Chr02 NC_080388.1:72222487-72222499in promoter 3791-3803 bp + 198 bp upstream of target TSS 98.8/ 100 2 72222697-72225713(+) SMil_00029285-RA_Salv MP00531 CTTTGACTTTTTT
SmilChr02G005332 Chr02 NC_080388.1:74155932-74155944in promoter 3657-3669 bp + 332 bp upstream of target TSS 98.8/ 100 2 74153415-74155600(-) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG
SmilChr01G005965 Chr01 NC_080387.1:75371088-75371100in promoter 3499-3511 bp - 490 bp upstream of target TSS 98.8/ 100 2 75371590-75371663(+) SMil_00029285-RA_Salv MP00531 AAAAAAGTCAAAG