Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr07G004480; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00029285-RA_Salv |
SmilChr07G004480 |
WRKY | XP_057776222.1 |
MP00531 |
CTTTGACTTTTTT |
9784 binding sites 6663 candidate target genes Page 1 / 134 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr02G004276 |
Chr02 | NC_080388.1:64957673-64957685in promoter 2757-2769 bp |
+ | 1232 bp upstream of target TSS | 100.0/ 100 | 4 | 64954210-64956441(-) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAACG |
SmilChr02G003714 |
Chr02 | NC_080388.1:58747087-58747099in promoter 345-357 bp |
- | 3644 bp upstream of target TSS | 100.0/ 100 | 3 | 58741135-58743443(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTC |
SmilChr02G005108 |
Chr02 | NC_080388.1:72595163-72595175in promoter 3790-3802 bp |
+ | 199 bp upstream of target TSS | 99.7/ 100 | 4 | 72591050-72594964(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAACG |
SmilChr01G001434 |
Chr01 | NC_080387.1:28012294-28012306in promoter 2889-2901 bp |
+ | 1100 bp upstream of target TSS | 99.7/ 100 | 2 | 28010553-28011194(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAACG |
SmilChr03G000219 |
Chr03 | NC_080389.1:2529618-2529630in promoter 731-743 bp |
+ | 3258 bp upstream of target TSS | 99.7/ 100 | 2 | 2532888-2534832(+) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTT |
SmilChr03G000709 |
Chr03 | NC_080389.1:7885986-7885998in promoter 3607-3619 bp |
- | 382 bp upstream of target TSS | 99.7/ 100 | 1 | 7878409-7885604(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTT |
SmilChr01G005847 |
Chr01 | NC_080387.1:74436929-74436941in promoter 2509-2521 bp |
- | 1480 bp upstream of target TSS | 99.7/ 100 | 1 | 74432516-74435449(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTT |
SmilChr03G000710 |
Chr03 | NC_080389.1:7885986-7885998in promoter 763-775 bp |
- | 3226 bp upstream of target TSS | 99.7/ 100 | 1 | 7889224-7889565(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAACG |
SmilChr03G001261 |
Chr03 | NC_080389.1:14556947-14556959in promoter 2974-2986 bp |
- | 1015 bp upstream of target TSS | 99.4/ 100 | 5 | 14545865-14555932(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTG |
SmilChr02G001749 |
Chr02 | NC_080388.1:32106559-32106571in promoter 1476-1488 bp |
+ | 2513 bp upstream of target TSS | 99.4/ 100 | 4 | 32109084-32110010(+) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTG |
SmilChr02G001687 |
Chr02 | NC_080388.1:31114620-31114632in promoter 249-261 bp |
- | 3740 bp upstream of target TSS | 99.4/ 100 | 2 | 31109680-31110880(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTG |
SmilChr02G001688 |
Chr02 | NC_080388.1:31114620-31114632in promoter 1510-1522 bp |
- | 2479 bp upstream of target TSS | 99.4/ 100 | 1 | 31111086-31112141(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTG |
SmilChr01G000971 |
Chr01 | NC_080387.1:20582252-20582264in promoter 2762-2774 bp |
+ | 1227 bp upstream of target TSS | 99.3/ 100 | 3 | 20571972-20581025(-) |
SMil_00029285-RA_Salv |
MP00531 |
GGAAAAGTCAACG |
SmilChr01G001065 |
Chr01 | NC_080387.1:22009496-22009508in promoter 2039-2051 bp |
- | 1950 bp upstream of target TSS | 99.3/ 100 | 3 | 22002683-22007546(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTCC |
SmilChr02G002963 |
Chr02 | NC_080388.1:50145716-50145728in promoter 1240-1252 bp |
- | 2749 bp upstream of target TSS | 99.1/ 100 | 3 | 50141901-50142967(-) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTA |
SmilChr02G000642 |
Chr02 | NC_080388.1:9707434-9707446in promoter 855-867 bp |
+ | 3134 bp upstream of target TSS | 99.1/ 100 | 2 | 9710580-9716954(+) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTGT |
SmilChr02G004329 |
Chr02 | NC_080388.1:65566659-65566671in promoter 2624-2636 bp |
+ | 1365 bp upstream of target TSS | 99.1/ 100 | 1 | 65568036-65572115(+) |
SMil_00029285-RA_Salv |
MP00531 |
CGTTGACTTTTTA |
SmilChr02G005499 |
Chr02 | NC_080388.1:75139489-75139501in promoter 3295-3307 bp |
+ | 694 bp upstream of target TSS | 99.0/ 100 | 3 | 75140195-75145256(+) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr03G000288 |
Chr03 | NC_080389.1:3271930-3271942in promoter 3224-3236 bp |
- | 765 bp upstream of target TSS | 99.0/ 100 | 3 | 3266456-3271165(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr01G002688 |
Chr01 | NC_080387.1:45108459-45108471in promoter 2446-2458 bp |
+ | 1543 bp upstream of target TSS | 99.0/ 100 | 3 | 45104700-45106916(-) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAAAG |
SmilChr01G000975 |
Chr01 | NC_080387.1:20604085-20604097in promoter 3866-3878 bp |
+ | 123 bp upstream of target TSS | 99.0/ 100 | 2 | 20601292-20603962(-) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAAAG |
SmilChr01G002295 |
Chr01 | NC_080387.1:39776916-39776928in promoter 2203-2215 bp |
+ | 1786 bp upstream of target TSS | 99.0/ 100 | 2 | 39778714-39782298(+) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr02G004521 |
Chr02 | NC_080388.1:67738501-67738513in promoter 1887-1899 bp |
- | 2102 bp upstream of target TSS | 99.0/ 100 | 2 | 67734728-67736399(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr01G002139 |
Chr01 | NC_080387.1:37374701-37374713in promoter 1273-1285 bp |
- | 2716 bp upstream of target TSS | 99.0/ 100 | 2 | 37377429-37378289(+) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAAAG |
SmilChr02G002537 |
Chr02 | NC_080388.1:44157774-44157786in promoter 3402-3414 bp |
- | 587 bp upstream of target TSS | 99.0/ 100 | 1 | 44154115-44157187(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr03G000100 |
Chr03 | NC_080389.1:1117383-1117395in promoter 3381-3393 bp |
- | 608 bp upstream of target TSS | 99.0/ 100 | 1 | 1114004-1116775(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr01G001323 |
Chr01 | NC_080387.1:26264406-26264418in promoter 3183-3195 bp |
- | 806 bp upstream of target TSS | 99.0/ 100 | 1 | 26265224-26266468(+) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAAAG |
SmilChr01G000170 |
Chr01 | NC_080387.1:2800035-2800047in promoter 3146-3158 bp |
+ | 843 bp upstream of target TSS | 99.0/ 100 | 1 | 2800890-2804009(+) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTC |
SmilChr02G002538 |
Chr02 | NC_080388.1:44157774-44157786in promoter 1868-1880 bp |
- | 2121 bp upstream of target TSS | 99.0/ 100 | 1 | 44159907-44165662(+) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAAAG |
SmilChr01G000974 |
Chr01 | NC_080387.1:20604085-20604097in promoter 753-765 bp |
+ | 3236 bp upstream of target TSS | 99.0/ 100 | 1 | 20596198-20600849(-) |
SMil_00029285-RA_Salv |
MP00531 |
GAAAAAGTCAAAG |
SmilChr02G004332 |
Chr02 | NC_080388.1:65590314-65590326in promoter 3526-3538 bp |
- | 463 bp upstream of target TSS | 98.8/ 100 | 4 | 65590789-65592409(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr02G000737 |
Chr02 | NC_080388.1:11950625-11950637in promoter 2753-2765 bp |
- | 1236 bp upstream of target TSS | 98.8/ 100 | 4 | 11948946-11949389(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr02G001431 |
Chr02 | NC_080388.1:27014791-27014803in promoter 1588-1600 bp |
+ | 2401 bp upstream of target TSS | 98.8/ 100 | 4 | 27008909-27012390(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr01G005674 |
Chr01 | NC_080387.1:73014496-73014508in promoter 233-245 bp |
+ | 3756 bp upstream of target TSS | 98.8/ 100 | 4 | 73018264-73019041(+) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr01G001165 |
Chr01 | NC_080387.1:23673443-23673455in promoter 3896-3908 bp |
+ | 93 bp upstream of target TSS | 98.8/ 100 | 3 | 23673548-23687383(+) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr02G000765 |
Chr02 | NC_080388.1:12522208-12522220in promoter 3570-3582 bp |
+ | 419 bp upstream of target TSS | 98.8/ 100 | 3 | 12517283-12521789(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr02G004331 |
Chr02 | NC_080388.1:65590314-65590326in promoter 3561-3573 bp |
- | 428 bp upstream of target TSS | 98.8/ 100 | 3 | 65584992-65589886(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr02G001644 |
Chr02 | NC_080388.1:30513788-30513800in promoter 3546-3558 bp |
- | 443 bp upstream of target TSS | 98.8/ 100 | 3 | 30514243-30517005(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr02G004921 |
Chr02 | NC_080388.1:71238684-71238696in promoter 3356-3368 bp |
- | 633 bp upstream of target TSS | 98.8/ 100 | 3 | 71239329-71241467(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr02G002868 |
Chr02 | NC_080388.1:48875923-48875935in promoter 2541-2553 bp |
- | 1448 bp upstream of target TSS | 98.8/ 100 | 3 | 48877383-48880617(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr01G004612 |
Chr01 | NC_080387.1:64082925-64082937in promoter 2073-2085 bp |
+ | 1916 bp upstream of target TSS | 98.8/ 100 | 3 | 64076344-64081009(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr01G003603 |
Chr01 | NC_080387.1:54577335-54577347in promoter 1780-1792 bp |
- | 2209 bp upstream of target TSS | 98.8/ 100 | 3 | 54579556-54580784(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr01G002417 |
Chr01 | NC_080387.1:41587382-41587394in promoter 1765-1777 bp |
+ | 2224 bp upstream of target TSS | 98.8/ 100 | 3 | 41561379-41585158(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr02G001483 |
Chr02 | NC_080388.1:27814269-27814281in promoter 1232-1244 bp |
+ | 2757 bp upstream of target TSS | 98.8/ 100 | 3 | 27807831-27811512(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr01G003686 |
Chr01 | NC_080387.1:55243510-55243522in promoter 501-513 bp |
- | 3488 bp upstream of target TSS | 98.8/ 100 | 3 | 55238048-55240022(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr01G002753 |
Chr01 | NC_080387.1:45853805-45853817in promoter 304-316 bp |
- | 3685 bp upstream of target TSS | 98.8/ 100 | 3 | 45847328-45850120(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr01G002122 |
Chr01 | NC_080387.1:37225505-37225517in promoter 3792-3804 bp |
- | 197 bp upstream of target TSS | 98.8/ 100 | 2 | 37222854-37225308(-) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr02G005049 |
Chr02 | NC_080388.1:72222487-72222499in promoter 3791-3803 bp |
+ | 198 bp upstream of target TSS | 98.8/ 100 | 2 | 72222697-72225713(+) |
SMil_00029285-RA_Salv |
MP00531 |
CTTTGACTTTTTT |
SmilChr02G005332 |
Chr02 | NC_080388.1:74155932-74155944in promoter 3657-3669 bp |
+ | 332 bp upstream of target TSS | 98.8/ 100 | 2 | 74153415-74155600(-) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |
SmilChr01G005965 |
Chr01 | NC_080387.1:75371088-75371100in promoter 3499-3511 bp |
- | 490 bp upstream of target TSS | 98.8/ 100 | 2 | 75371590-75371663(+) |
SMil_00029285-RA_Salv |
MP00531 |
AAAAAAGTCAAAG |