TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr04G002757; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00005037-RA_Salv SmilChr04G002757 MIKC_MADS XP_057807158.1 MP00272 ACTTTCCTTTTTTGG

Predicted Target Genes

9889 binding sites 7172 candidate target genes Page 2 / 144 Download TSV

Previous 2 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr02G001324 Chr02 NC_080388.1:24730282-24730296in promoter 3656-3670 bp + 331 bp upstream of target TSS 99.7/ 100 2 24730627-24732489(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G003898 Chr05 NC_080391.1:52741837-52741851in promoter 3643-3657 bp - 344 bp upstream of target TSS 99.7/ 100 2 52742195-52747940(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr04G002848 Chr04 NC_080390.1:44590116-44590130in promoter 3622-3636 bp + 365 bp upstream of target TSS 99.7/ 100 2 44585088-44589751(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G003138 Chr01 NC_080387.1:50166982-50166996in promoter 3594-3608 bp + 393 bp upstream of target TSS 99.7/ 100 2 50165129-50166589(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr04G002084 Chr04 NC_080390.1:33601085-33601099in promoter 3547-3561 bp + 440 bp upstream of target TSS 99.7/ 100 2 33598622-33600645(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr02G002189 Chr02 NC_080388.1:39082725-39082739in promoter 3338-3352 bp - 649 bp upstream of target TSS 99.7/ 100 2 39083388-39087574(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr03G001421 Chr03 NC_080389.1:16831915-16831929in promoter 3326-3340 bp - 661 bp upstream of target TSS 99.7/ 100 2 16832590-16834140(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr05G001235 Chr05 NC_080391.1:10467397-10467411in promoter 3307-3321 bp - 680 bp upstream of target TSS 99.7/ 100 2 10468091-10474523(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr05G003502 Chr05 NC_080391.1:46679154-46679168in promoter 3290-3304 bp - 697 bp upstream of target TSS 99.7/ 100 2 46679865-46686703(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G001327 Chr01 NC_080387.1:26404421-26404435in promoter 3221-3235 bp - 766 bp upstream of target TSS 99.7/ 100 2 26402990-26403655(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000199 Chr05 NC_080391.1:1594901-1594915in promoter 3168-3182 bp - 819 bp upstream of target TSS 99.7/ 100 2 1595734-1598962(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G005997 Chr01 NC_080387.1:75557045-75557059in promoter 3088-3102 bp - 899 bp upstream of target TSS 99.7/ 100 2 75552914-75556146(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000803 Chr05 NC_080391.1:6281729-6281743in promoter 2924-2938 bp - 1063 bp upstream of target TSS 99.7/ 100 2 6282806-6285049(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G002904 Chr01 NC_080387.1:47738442-47738456in promoter 2855-2869 bp + 1132 bp upstream of target TSS 99.7/ 100 2 47739588-47750761(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000916 Chr05 NC_080391.1:7276951-7276965in promoter 2814-2828 bp - 1173 bp upstream of target TSS 99.7/ 100 2 7278138-7278922(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr06G001208 Chr06 NC_080392.1:12360941-12360955in promoter 2794-2808 bp + 1193 bp upstream of target TSS 99.7/ 100 2 12362148-12366041(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr01G003582 Chr01 NC_080387.1:54382598-54382612in promoter 2767-2781 bp - 1220 bp upstream of target TSS 99.7/ 100 2 54383832-54388134(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G000873 Chr01 NC_080387.1:18606969-18606983in promoter 2758-2772 bp + 1229 bp upstream of target TSS 99.7/ 100 2 18604931-18605740(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr05G003582 Chr05 NC_080391.1:47850265-47850279in promoter 2727-2741 bp - 1260 bp upstream of target TSS 99.7/ 100 2 47851539-47854876(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G000870 Chr01 NC_080387.1:18570638-18570652in promoter 2680-2694 bp + 1307 bp upstream of target TSS 99.7/ 100 2 18567168-18569331(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr01G003003 Chr01 NC_080387.1:49025605-49025619in promoter 2654-2668 bp + 1333 bp upstream of target TSS 99.7/ 100 2 49021629-49024272(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr04G000105 Chr04 NC_080390.1:931100-931114in promoter 2570-2584 bp + 1417 bp upstream of target TSS 99.7/ 100 2 932531-938147(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr04G001495 Chr04 NC_080390.1:24509155-24509169in promoter 2533-2547 bp - 1454 bp upstream of target TSS 99.7/ 100 2 24510623-24511632(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr02G003763 Chr02 NC_080388.1:59308668-59308682in promoter 2360-2374 bp - 1627 bp upstream of target TSS 99.7/ 100 2 59310309-59313153(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr02G003964 Chr02 NC_080388.1:61796601-61796615in promoter 2271-2285 bp + 1716 bp upstream of target TSS 99.7/ 100 2 61791360-61794885(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr03G003682 Chr03 NC_080389.1:55663674-55663688in promoter 2205-2219 bp - 1782 bp upstream of target TSS 99.7/ 100 2 55655627-55661892(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr06G001237 Chr06 NC_080392.1:12774641-12774655in promoter 2167-2181 bp + 1820 bp upstream of target TSS 99.7/ 100 2 12750540-12772821(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr03G000279 Chr03 NC_080389.1:3175583-3175597in promoter 2097-2111 bp - 1890 bp upstream of target TSS 99.7/ 100 2 3171369-3173693(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000771 Chr05 NC_080391.1:6013584-6013598in promoter 1987-2001 bp - 2000 bp upstream of target TSS 99.7/ 100 2 6006738-6011584(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000917 Chr05 NC_080391.1:7276951-7276965in promoter 1982-1996 bp - 2005 bp upstream of target TSS 99.7/ 100 2 7278970-7281358(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr03G001392 Chr03 NC_080389.1:16502187-16502201in promoter 1916-1930 bp - 2071 bp upstream of target TSS 99.7/ 100 2 16504272-16507413(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr05G000193 Chr05 NC_080391.1:1594901-1594915in promoter 1895-1909 bp - 2092 bp upstream of target TSS 99.7/ 100 2 1547844-1592809(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr01G005003 Chr01 NC_080387.1:68074364-68074378in promoter 1874-1888 bp - 2113 bp upstream of target TSS 99.7/ 100 2 68076491-68103913(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr04G000328 Chr04 NC_080390.1:3024845-3024859in promoter 1794-1808 bp + 2193 bp upstream of target TSS 99.7/ 100 2 3027052-3032335(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr04G002981 Chr04 NC_080390.1:46236145-46236159in promoter 1758-1772 bp - 2229 bp upstream of target TSS 99.7/ 100 2 46238388-46242612(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr05G000664 Chr05 NC_080391.1:5020226-5020240in promoter 1073-1087 bp + 2914 bp upstream of target TSS 99.7/ 100 2 5023154-5025239(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000715 Chr05 NC_080391.1:5441645-5441659in promoter 1045-1059 bp - 2942 bp upstream of target TSS 99.7/ 100 2 5436724-5438703(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr01G002371 Chr01 NC_080387.1:40905692-40905706in promoter 957-971 bp - 3030 bp upstream of target TSS 99.7/ 100 2 40893647-40902662(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr02G001525 Chr02 NC_080388.1:28378013-28378027in promoter 922-936 bp + 3065 bp upstream of target TSS 99.7/ 100 2 28381092-28381587(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr01G001419 Chr01 NC_080387.1:27772015-27772029in promoter 910-924 bp - 3077 bp upstream of target TSS 99.7/ 100 2 27775106-27775179(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr03G000233 Chr03 NC_080389.1:2764150-2764164in promoter 899-913 bp + 3088 bp upstream of target TSS 99.7/ 100 2 2767252-2771555(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G003188 Chr05 NC_080391.1:40790538-40790552in promoter 885-899 bp + 3102 bp upstream of target TSS 99.7/ 100 2 40782273-40787436(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr02G001024 Chr02 NC_080388.1:18150073-18150087in promoter 863-877 bp + 3124 bp upstream of target TSS 99.7/ 100 2 18153211-18157450(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr01G003118 Chr01 NC_080387.1:49986937-49986951in promoter 746-760 bp + 3241 bp upstream of target TSS 99.7/ 100 2 49990192-49990330(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr02G002376 Chr02 NC_080388.1:41646435-41646449in promoter 631-645 bp - 3356 bp upstream of target TSS 99.7/ 100 2 41649805-41652168(+) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT
SmilChr03G001400 Chr03 NC_080389.1:16603177-16603191in promoter 481-495 bp + 3506 bp upstream of target TSS 99.7/ 100 2 16606697-16609108(+) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr05G000767 Chr05 NC_080391.1:5967305-5967319in promoter 426-440 bp - 3561 bp upstream of target TSS 99.7/ 100 2 5962653-5963744(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr06G001494 Chr06 NC_080392.1:16002071-16002085in promoter 348-362 bp - 3639 bp upstream of target TSS 99.7/ 100 2 15993701-15998432(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr02G001804 Chr02 NC_080388.1:32895908-32895922in promoter 287-301 bp - 3700 bp upstream of target TSS 99.7/ 100 2 32888362-32892208(-) SMil_00005037-RA_Salv MP00272 ACTTTCCTTTTTGGG
SmilChr06G001468 Chr06 NC_080392.1:15575162-15575176in promoter 161-175 bp + 3826 bp upstream of target TSS 99.7/ 100 2 15569451-15571336(-) SMil_00005037-RA_Salv MP00272 CCCAAAAAGGAAAGT