Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr04G002757; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00005037-RA_Salv |
SmilChr04G002757 |
MIKC_MADS | XP_057807158.1 |
MP00272 |
ACTTTCCTTTTTTGG |
9889 binding sites 7172 candidate target genes Page 2 / 144 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr02G001324 |
Chr02 | NC_080388.1:24730282-24730296in promoter 3656-3670 bp |
+ | 331 bp upstream of target TSS | 99.7/ 100 | 2 | 24730627-24732489(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G003898 |
Chr05 | NC_080391.1:52741837-52741851in promoter 3643-3657 bp |
- | 344 bp upstream of target TSS | 99.7/ 100 | 2 | 52742195-52747940(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr04G002848 |
Chr04 | NC_080390.1:44590116-44590130in promoter 3622-3636 bp |
+ | 365 bp upstream of target TSS | 99.7/ 100 | 2 | 44585088-44589751(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G003138 |
Chr01 | NC_080387.1:50166982-50166996in promoter 3594-3608 bp |
+ | 393 bp upstream of target TSS | 99.7/ 100 | 2 | 50165129-50166589(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr04G002084 |
Chr04 | NC_080390.1:33601085-33601099in promoter 3547-3561 bp |
+ | 440 bp upstream of target TSS | 99.7/ 100 | 2 | 33598622-33600645(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr02G002189 |
Chr02 | NC_080388.1:39082725-39082739in promoter 3338-3352 bp |
- | 649 bp upstream of target TSS | 99.7/ 100 | 2 | 39083388-39087574(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr03G001421 |
Chr03 | NC_080389.1:16831915-16831929in promoter 3326-3340 bp |
- | 661 bp upstream of target TSS | 99.7/ 100 | 2 | 16832590-16834140(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr05G001235 |
Chr05 | NC_080391.1:10467397-10467411in promoter 3307-3321 bp |
- | 680 bp upstream of target TSS | 99.7/ 100 | 2 | 10468091-10474523(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr05G003502 |
Chr05 | NC_080391.1:46679154-46679168in promoter 3290-3304 bp |
- | 697 bp upstream of target TSS | 99.7/ 100 | 2 | 46679865-46686703(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G001327 |
Chr01 | NC_080387.1:26404421-26404435in promoter 3221-3235 bp |
- | 766 bp upstream of target TSS | 99.7/ 100 | 2 | 26402990-26403655(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000199 |
Chr05 | NC_080391.1:1594901-1594915in promoter 3168-3182 bp |
- | 819 bp upstream of target TSS | 99.7/ 100 | 2 | 1595734-1598962(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G005997 |
Chr01 | NC_080387.1:75557045-75557059in promoter 3088-3102 bp |
- | 899 bp upstream of target TSS | 99.7/ 100 | 2 | 75552914-75556146(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000803 |
Chr05 | NC_080391.1:6281729-6281743in promoter 2924-2938 bp |
- | 1063 bp upstream of target TSS | 99.7/ 100 | 2 | 6282806-6285049(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G002904 |
Chr01 | NC_080387.1:47738442-47738456in promoter 2855-2869 bp |
+ | 1132 bp upstream of target TSS | 99.7/ 100 | 2 | 47739588-47750761(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000916 |
Chr05 | NC_080391.1:7276951-7276965in promoter 2814-2828 bp |
- | 1173 bp upstream of target TSS | 99.7/ 100 | 2 | 7278138-7278922(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr06G001208 |
Chr06 | NC_080392.1:12360941-12360955in promoter 2794-2808 bp |
+ | 1193 bp upstream of target TSS | 99.7/ 100 | 2 | 12362148-12366041(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr01G003582 |
Chr01 | NC_080387.1:54382598-54382612in promoter 2767-2781 bp |
- | 1220 bp upstream of target TSS | 99.7/ 100 | 2 | 54383832-54388134(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G000873 |
Chr01 | NC_080387.1:18606969-18606983in promoter 2758-2772 bp |
+ | 1229 bp upstream of target TSS | 99.7/ 100 | 2 | 18604931-18605740(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr05G003582 |
Chr05 | NC_080391.1:47850265-47850279in promoter 2727-2741 bp |
- | 1260 bp upstream of target TSS | 99.7/ 100 | 2 | 47851539-47854876(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G000870 |
Chr01 | NC_080387.1:18570638-18570652in promoter 2680-2694 bp |
+ | 1307 bp upstream of target TSS | 99.7/ 100 | 2 | 18567168-18569331(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr01G003003 |
Chr01 | NC_080387.1:49025605-49025619in promoter 2654-2668 bp |
+ | 1333 bp upstream of target TSS | 99.7/ 100 | 2 | 49021629-49024272(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr04G000105 |
Chr04 | NC_080390.1:931100-931114in promoter 2570-2584 bp |
+ | 1417 bp upstream of target TSS | 99.7/ 100 | 2 | 932531-938147(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr04G001495 |
Chr04 | NC_080390.1:24509155-24509169in promoter 2533-2547 bp |
- | 1454 bp upstream of target TSS | 99.7/ 100 | 2 | 24510623-24511632(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr02G003763 |
Chr02 | NC_080388.1:59308668-59308682in promoter 2360-2374 bp |
- | 1627 bp upstream of target TSS | 99.7/ 100 | 2 | 59310309-59313153(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr02G003964 |
Chr02 | NC_080388.1:61796601-61796615in promoter 2271-2285 bp |
+ | 1716 bp upstream of target TSS | 99.7/ 100 | 2 | 61791360-61794885(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr03G003682 |
Chr03 | NC_080389.1:55663674-55663688in promoter 2205-2219 bp |
- | 1782 bp upstream of target TSS | 99.7/ 100 | 2 | 55655627-55661892(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr06G001237 |
Chr06 | NC_080392.1:12774641-12774655in promoter 2167-2181 bp |
+ | 1820 bp upstream of target TSS | 99.7/ 100 | 2 | 12750540-12772821(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr03G000279 |
Chr03 | NC_080389.1:3175583-3175597in promoter 2097-2111 bp |
- | 1890 bp upstream of target TSS | 99.7/ 100 | 2 | 3171369-3173693(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000771 |
Chr05 | NC_080391.1:6013584-6013598in promoter 1987-2001 bp |
- | 2000 bp upstream of target TSS | 99.7/ 100 | 2 | 6006738-6011584(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000917 |
Chr05 | NC_080391.1:7276951-7276965in promoter 1982-1996 bp |
- | 2005 bp upstream of target TSS | 99.7/ 100 | 2 | 7278970-7281358(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr03G001392 |
Chr03 | NC_080389.1:16502187-16502201in promoter 1916-1930 bp |
- | 2071 bp upstream of target TSS | 99.7/ 100 | 2 | 16504272-16507413(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr05G000193 |
Chr05 | NC_080391.1:1594901-1594915in promoter 1895-1909 bp |
- | 2092 bp upstream of target TSS | 99.7/ 100 | 2 | 1547844-1592809(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr01G005003 |
Chr01 | NC_080387.1:68074364-68074378in promoter 1874-1888 bp |
- | 2113 bp upstream of target TSS | 99.7/ 100 | 2 | 68076491-68103913(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr04G000328 |
Chr04 | NC_080390.1:3024845-3024859in promoter 1794-1808 bp |
+ | 2193 bp upstream of target TSS | 99.7/ 100 | 2 | 3027052-3032335(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr04G002981 |
Chr04 | NC_080390.1:46236145-46236159in promoter 1758-1772 bp |
- | 2229 bp upstream of target TSS | 99.7/ 100 | 2 | 46238388-46242612(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr05G000664 |
Chr05 | NC_080391.1:5020226-5020240in promoter 1073-1087 bp |
+ | 2914 bp upstream of target TSS | 99.7/ 100 | 2 | 5023154-5025239(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000715 |
Chr05 | NC_080391.1:5441645-5441659in promoter 1045-1059 bp |
- | 2942 bp upstream of target TSS | 99.7/ 100 | 2 | 5436724-5438703(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr01G002371 |
Chr01 | NC_080387.1:40905692-40905706in promoter 957-971 bp |
- | 3030 bp upstream of target TSS | 99.7/ 100 | 2 | 40893647-40902662(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr02G001525 |
Chr02 | NC_080388.1:28378013-28378027in promoter 922-936 bp |
+ | 3065 bp upstream of target TSS | 99.7/ 100 | 2 | 28381092-28381587(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr01G001419 |
Chr01 | NC_080387.1:27772015-27772029in promoter 910-924 bp |
- | 3077 bp upstream of target TSS | 99.7/ 100 | 2 | 27775106-27775179(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr03G000233 |
Chr03 | NC_080389.1:2764150-2764164in promoter 899-913 bp |
+ | 3088 bp upstream of target TSS | 99.7/ 100 | 2 | 2767252-2771555(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G003188 |
Chr05 | NC_080391.1:40790538-40790552in promoter 885-899 bp |
+ | 3102 bp upstream of target TSS | 99.7/ 100 | 2 | 40782273-40787436(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr02G001024 |
Chr02 | NC_080388.1:18150073-18150087in promoter 863-877 bp |
+ | 3124 bp upstream of target TSS | 99.7/ 100 | 2 | 18153211-18157450(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr01G003118 |
Chr01 | NC_080387.1:49986937-49986951in promoter 746-760 bp |
+ | 3241 bp upstream of target TSS | 99.7/ 100 | 2 | 49990192-49990330(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr02G002376 |
Chr02 | NC_080388.1:41646435-41646449in promoter 631-645 bp |
- | 3356 bp upstream of target TSS | 99.7/ 100 | 2 | 41649805-41652168(+) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |
SmilChr03G001400 |
Chr03 | NC_080389.1:16603177-16603191in promoter 481-495 bp |
+ | 3506 bp upstream of target TSS | 99.7/ 100 | 2 | 16606697-16609108(+) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr05G000767 |
Chr05 | NC_080391.1:5967305-5967319in promoter 426-440 bp |
- | 3561 bp upstream of target TSS | 99.7/ 100 | 2 | 5962653-5963744(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr06G001494 |
Chr06 | NC_080392.1:16002071-16002085in promoter 348-362 bp |
- | 3639 bp upstream of target TSS | 99.7/ 100 | 2 | 15993701-15998432(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr02G001804 |
Chr02 | NC_080388.1:32895908-32895922in promoter 287-301 bp |
- | 3700 bp upstream of target TSS | 99.7/ 100 | 2 | 32888362-32892208(-) |
SMil_00005037-RA_Salv |
MP00272 |
ACTTTCCTTTTTGGG |
SmilChr06G001468 |
Chr06 | NC_080392.1:15575162-15575176in promoter 161-175 bp |
+ | 3826 bp upstream of target TSS | 99.7/ 100 | 2 | 15569451-15571336(-) |
SMil_00005037-RA_Salv |
MP00272 |
CCCAAAAAGGAAAGT |