Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr03G002503; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00027448-RA_Salv |
SmilChr03G002503 |
MYB | XP_057801356.1 |
MP00482 |
AAAATATGACCGTTG |
8940 binding sites 6899 candidate target genes Page 1 / 138 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr07G003910 |
Chr07 | NC_080393.1:49301771-49301785in promoter 2664-2678 bp |
- | 1323 bp upstream of target TSS | 100.0/ 100 | 2 | 49303108-49304703(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCACATTTT |
SmilChr07G003983 |
Chr07 | NC_080393.1:50821307-50821321in promoter 3885-3899 bp |
+ | 102 bp upstream of target TSS | 99.7/ 100 | 3 | 50818134-50821205(-) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCACATTTC |
SmilChr02G003423 |
Chr02 | NC_080388.1:55440252-55440266in promoter 3341-3355 bp |
- | 646 bp upstream of target TSS | 99.7/ 100 | 1 | 55436345-55439606(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAATATGACCGTTG |
SmilChr03G003289 |
Chr03 | NC_080389.1:51000338-51000352in promoter 2178-2192 bp |
- | 1809 bp upstream of target TSS | 99.7/ 100 | 1 | 50997014-50998529(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAATATGACCGTTG |
SmilChr04G001224 |
Chr04 | NC_080390.1:19095318-19095332in promoter 763-777 bp |
- | 3224 bp upstream of target TSS | 99.7/ 100 | 1 | 19098556-19103693(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCATATTTT |
SmilChr01G002250 |
Chr01 | NC_080387.1:39125003-39125017in promoter 3837-3851 bp |
- | 150 bp upstream of target TSS | 99.3/ 100 | 5 | 39124182-39124853(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr07G002049 |
Chr07 | NC_080393.1:18616437-18616451in promoter 3848-3862 bp |
- | 139 bp upstream of target TSS | 99.3/ 100 | 2 | 18615423-18616298(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr05G001970 |
Chr05 | NC_080391.1:20330802-20330816in promoter 3747-3761 bp |
+ | 240 bp upstream of target TSS | 99.3/ 100 | 2 | 20331056-20333011(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr08G003704 |
Chr08 | NC_080394.1:41539859-41539873in promoter 3372-3386 bp |
+ | 615 bp upstream of target TSS | 99.3/ 100 | 2 | 41537865-41539244(-) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCATTTTTT |
SmilChr07G002050 |
Chr07 | NC_080393.1:18616437-18616451in promoter 1172-1186 bp |
- | 2815 bp upstream of target TSS | 99.3/ 100 | 2 | 18619266-18620233(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCATTTTTT |
SmilChr03G001891 |
Chr03 | NC_080389.1:26417660-26417674in promoter 76-90 bp |
+ | 3911 bp upstream of target TSS | 99.3/ 100 | 2 | 26421585-26424779(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr08G002614 |
Chr08 | NC_080394.1:25487692-25487706in promoter 3597-3611 bp |
+ | 390 bp upstream of target TSS | 99.3/ 100 | 1 | 25488096-25489245(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr08G001493 |
Chr08 | NC_080394.1:12076993-12077007in promoter 2429-2443 bp |
+ | 1558 bp upstream of target TSS | 99.3/ 100 | 1 | 12078565-12082612(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr07G004294 |
Chr07 | NC_080393.1:55488022-55488036in promoter 1869-1883 bp |
- | 2118 bp upstream of target TSS | 99.3/ 100 | 1 | 55490154-55492501(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCATATTTC |
SmilChr01G001046 |
Chr01 | NC_080387.1:21732832-21732846in promoter 1515-1529 bp |
- | 2472 bp upstream of target TSS | 99.3/ 100 | 1 | 21720347-21730360(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAAATGACCGTTG |
SmilChr03G002836 |
Chr03 | NC_080389.1:44872589-44872603in promoter 3426-3440 bp |
- | 561 bp upstream of target TSS | 99.2/ 100 | 1 | 44869156-44872028(-) |
SMil_00027448-RA_Salv |
MP00482 |
GAATTGTGACCGTTG |
SmilChr06G000738 |
Chr06 | NC_080392.1:6845291-6845305in promoter 1649-1663 bp |
+ | 2338 bp upstream of target TSS | 99.2/ 100 | 1 | 6820627-6842953(-) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCATAATTT |
SmilChr05G001910 |
Chr05 | NC_080391.1:19369671-19369685in promoter 3756-3770 bp |
+ | 231 bp upstream of target TSS | 99.0/ 100 | 3 | 19369916-19371708(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAATTGACCGTTG |
SmilChr05G001909 |
Chr05 | NC_080391.1:19369671-19369685in promoter 2835-2849 bp |
+ | 1152 bp upstream of target TSS | 99.0/ 100 | 3 | 19365804-19368519(-) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCAATTTTT |
SmilChr06G000453 |
Chr06 | NC_080392.1:3673375-3673389in promoter 3802-3816 bp |
+ | 185 bp upstream of target TSS | 99.0/ 100 | 2 | 3673574-3675178(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAACTGACCGTTG |
SmilChr04G001533 |
Chr04 | NC_080390.1:25248495-25248509in promoter 3768-3782 bp |
- | 219 bp upstream of target TSS | 99.0/ 100 | 2 | 25248728-25251709(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCAGTTTTT |
SmilChr03G001779 |
Chr03 | NC_080389.1:24302280-24302294in promoter 3324-3338 bp |
+ | 663 bp upstream of target TSS | 99.0/ 100 | 2 | 24302957-24304005(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAATTGACCGTTG |
SmilChr02G002941 |
Chr02 | NC_080388.1:49910979-49910993in promoter 2765-2779 bp |
- | 1222 bp upstream of target TSS | 99.0/ 100 | 2 | 49912215-49914291(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCAATTTTT |
SmilChr06G000454 |
Chr06 | NC_080392.1:3673375-3673389in promoter 1787-1801 bp |
+ | 2200 bp upstream of target TSS | 99.0/ 100 | 2 | 3675589-3676510(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAACTGACCGTTG |
SmilChr06G002281 |
Chr06 | NC_080392.1:32752873-32752887in promoter 3959-3973 bp |
+ | 28 bp upstream of target TSS | 99.0/ 100 | 1 | 32752915-32754573(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAACTGACCGTTG |
SmilChr01G001545 |
Chr01 | NC_080387.1:29448550-29448564in promoter 3817-3831 bp |
+ | 170 bp upstream of target TSS | 99.0/ 100 | 1 | 29448734-29450543(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAACTGACCGTTG |
SmilChr06G001941 |
Chr06 | NC_080392.1:23834905-23834919in promoter 3775-3789 bp |
- | 212 bp upstream of target TSS | 99.0/ 100 | 1 | 23831066-23834693(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAACTGACCGTTG |
SmilChr07G001202 |
Chr07 | NC_080393.1:9168877-9168891in promoter 3139-3153 bp |
- | 848 bp upstream of target TSS | 99.0/ 100 | 1 | 9163015-9168029(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAATTGACCGTTG |
SmilChr01G000131 |
Chr01 | NC_080387.1:2204240-2204254in promoter 2833-2847 bp |
+ | 1154 bp upstream of target TSS | 99.0/ 100 | 1 | 2199994-2203086(-) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGCCATATTTC |
SmilChr05G004258 |
Chr05 | NC_080391.1:56387828-56387842in promoter 2524-2538 bp |
- | 1463 bp upstream of target TSS | 99.0/ 100 | 1 | 56382501-56386365(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAAACTGACCGTTG |
SmilChr04G000269 |
Chr04 | NC_080390.1:2459035-2459049in promoter 1941-1955 bp |
- | 2046 bp upstream of target TSS | 99.0/ 100 | 1 | 2461095-2498487(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCAATTTTT |
SmilChr07G001203 |
Chr07 | NC_080393.1:9168877-9168891in promoter 858-872 bp |
- | 3129 bp upstream of target TSS | 99.0/ 100 | 1 | 9172020-9177330(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCAATTTTT |
SmilChr01G003182 |
Chr01 | NC_080387.1:50608318-50608332in promoter 3665-3679 bp |
- | 322 bp upstream of target TSS | 98.9/ 100 | 1 | 50592708-50607996(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAATGTAACCGTTG |
SmilChr02G002557 |
Chr02 | NC_080388.1:44473717-44473731in promoter 3845-3859 bp |
+ | 142 bp upstream of target TSS | 98.8/ 100 | 1 | 44473873-44500678(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAAATTTGACCGTTG |
SmilChr03G001346 |
Chr03 | NC_080389.1:15714344-15714358in promoter 832-846 bp |
+ | 3155 bp upstream of target TSS | 98.6/ 100 | 5 | 15709870-15711189(-) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTTATATTTT |
SmilChr06G002858 |
Chr06 | NC_080392.1:41370110-41370124in promoter 3905-3919 bp |
- | 82 bp upstream of target TSS | 98.6/ 100 | 2 | 41370206-41373213(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCACATTCC |
SmilChr08G004783 |
Chr08 | NC_080394.1:57153478-57153492in promoter 3983-3997 bp |
- | 4 bp upstream of target TSS | 98.6/ 100 | 1 | 57149209-57153474(-) |
SMil_00027448-RA_Salv |
MP00482 |
ACAAAGTGACCGTTG |
SmilChr02G004040 |
Chr02 | NC_080388.1:62717257-62717271in promoter 3976-3990 bp |
+ | 11 bp upstream of target TSS | 98.6/ 100 | 1 | 62717282-62719057(+) |
SMil_00027448-RA_Salv |
MP00482 |
AGAAAGTGACCGTTG |
SmilChr08G000746 |
Chr08 | NC_080394.1:5518303-5518317in promoter 3966-3980 bp |
- | 21 bp upstream of target TSS | 98.6/ 100 | 1 | 5515904-5518282(-) |
SMil_00027448-RA_Salv |
MP00482 |
AGAATATGACCGTTG |
SmilChr01G002421 |
Chr01 | NC_080387.1:41665170-41665184in promoter 3358-3372 bp |
- | 629 bp upstream of target TSS | 98.6/ 100 | 1 | 41662527-41664541(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAACATGACCGTTG |
SmilChr04G000411 |
Chr04 | NC_080390.1:4286900-4286914in promoter 1036-1050 bp |
- | 2951 bp upstream of target TSS | 98.6/ 100 | 1 | 4289865-4291808(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCACTTTCT |
SmilChr08G001987 |
Chr08 | NC_080394.1:17597382-17597396in promoter 3864-3878 bp |
- | 123 bp upstream of target TSS | 98.5/ 100 | 3 | 17595035-17597259(-) |
SMil_00027448-RA_Salv |
MP00482 |
TAAAAATGACCGTTG |
SmilChr04G001385 |
Chr04 | NC_080390.1:22521089-22521103in promoter 3646-3660 bp |
+ | 341 bp upstream of target TSS | 98.5/ 100 | 3 | 22521444-22523065(+) |
SMil_00027448-RA_Salv |
MP00482 |
TAAAAATGACCGTTG |
SmilChr02G004424 |
Chr02 | NC_080388.1:66575704-66575718in promoter 2096-2110 bp |
- | 1891 bp upstream of target TSS | 98.5/ 100 | 3 | 66570968-66573813(-) |
SMil_00027448-RA_Salv |
MP00482 |
TAAATCTGACCGTTG |
SmilChr03G002514 |
Chr03 | NC_080389.1:40011304-40011318in promoter 3804-3818 bp |
- | 183 bp upstream of target TSS | 98.5/ 100 | 2 | 40011501-40012238(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAACGGTCATTTTTA |
SmilChr01G005650 |
Chr01 | NC_080387.1:72889530-72889544in promoter 2478-2492 bp |
- | 1509 bp upstream of target TSS | 98.5/ 100 | 2 | 72886878-72888021(-) |
SMil_00027448-RA_Salv |
MP00482 |
AAAATATGACCGTTA |
SmilChr04G003096 |
Chr04 | NC_080390.1:47570729-47570743in promoter 68-82 bp |
+ | 3919 bp upstream of target TSS | 98.5/ 100 | 2 | 47574662-47576809(+) |
SMil_00027448-RA_Salv |
MP00482 |
AAAATATGACCGTTA |
SmilChr04G000036 |
Chr04 | NC_080390.1:334920-334934in promoter 3705-3719 bp |
+ | 282 bp upstream of target TSS | 98.5/ 100 | 1 | 335216-337791(+) |
SMil_00027448-RA_Salv |
MP00482 |
CAATTATGACCGTTG |
SmilChr08G000932 |
Chr08 | NC_080394.1:6907691-6907705in promoter 3587-3601 bp |
+ | 400 bp upstream of target TSS | 98.5/ 100 | 1 | 6908105-6916562(+) |
SMil_00027448-RA_Salv |
MP00482 |
ATAAAGTGACCGTTG |
SmilChr08G000934 |
Chr08 | NC_080394.1:6927268-6927282in promoter 3587-3601 bp |
+ | 400 bp upstream of target TSS | 98.5/ 100 | 1 | 6927682-6936138(+) |
SMil_00027448-RA_Salv |
MP00482 |
ATAAAGTGACCGTTG |