TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr03G002503; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00027448-RA_Salv SmilChr03G002503 MYB XP_057801356.1 MP00482 AAAATATGACCGTTG

Predicted Target Genes

8940 binding sites 6899 candidate target genes Page 1 / 138 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr07G003910 Chr07 NC_080393.1:49301771-49301785in promoter 2664-2678 bp - 1323 bp upstream of target TSS 100.0/ 100 2 49303108-49304703(+) SMil_00027448-RA_Salv MP00482 CAACGGTCACATTTT
SmilChr07G003983 Chr07 NC_080393.1:50821307-50821321in promoter 3885-3899 bp + 102 bp upstream of target TSS 99.7/ 100 3 50818134-50821205(-) SMil_00027448-RA_Salv MP00482 CAACGGTCACATTTC
SmilChr02G003423 Chr02 NC_080388.1:55440252-55440266in promoter 3341-3355 bp - 646 bp upstream of target TSS 99.7/ 100 1 55436345-55439606(-) SMil_00027448-RA_Salv MP00482 AAAATATGACCGTTG
SmilChr03G003289 Chr03 NC_080389.1:51000338-51000352in promoter 2178-2192 bp - 1809 bp upstream of target TSS 99.7/ 100 1 50997014-50998529(-) SMil_00027448-RA_Salv MP00482 AAAATATGACCGTTG
SmilChr04G001224 Chr04 NC_080390.1:19095318-19095332in promoter 763-777 bp - 3224 bp upstream of target TSS 99.7/ 100 1 19098556-19103693(+) SMil_00027448-RA_Salv MP00482 CAACGGTCATATTTT
SmilChr01G002250 Chr01 NC_080387.1:39125003-39125017in promoter 3837-3851 bp - 150 bp upstream of target TSS 99.3/ 100 5 39124182-39124853(-) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr07G002049 Chr07 NC_080393.1:18616437-18616451in promoter 3848-3862 bp - 139 bp upstream of target TSS 99.3/ 100 2 18615423-18616298(-) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr05G001970 Chr05 NC_080391.1:20330802-20330816in promoter 3747-3761 bp + 240 bp upstream of target TSS 99.3/ 100 2 20331056-20333011(+) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr08G003704 Chr08 NC_080394.1:41539859-41539873in promoter 3372-3386 bp + 615 bp upstream of target TSS 99.3/ 100 2 41537865-41539244(-) SMil_00027448-RA_Salv MP00482 CAACGGTCATTTTTT
SmilChr07G002050 Chr07 NC_080393.1:18616437-18616451in promoter 1172-1186 bp - 2815 bp upstream of target TSS 99.3/ 100 2 18619266-18620233(+) SMil_00027448-RA_Salv MP00482 CAACGGTCATTTTTT
SmilChr03G001891 Chr03 NC_080389.1:26417660-26417674in promoter 76-90 bp + 3911 bp upstream of target TSS 99.3/ 100 2 26421585-26424779(+) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr08G002614 Chr08 NC_080394.1:25487692-25487706in promoter 3597-3611 bp + 390 bp upstream of target TSS 99.3/ 100 1 25488096-25489245(+) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr08G001493 Chr08 NC_080394.1:12076993-12077007in promoter 2429-2443 bp + 1558 bp upstream of target TSS 99.3/ 100 1 12078565-12082612(+) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr07G004294 Chr07 NC_080393.1:55488022-55488036in promoter 1869-1883 bp - 2118 bp upstream of target TSS 99.3/ 100 1 55490154-55492501(+) SMil_00027448-RA_Salv MP00482 CAACGGTCATATTTC
SmilChr01G001046 Chr01 NC_080387.1:21732832-21732846in promoter 1515-1529 bp - 2472 bp upstream of target TSS 99.3/ 100 1 21720347-21730360(-) SMil_00027448-RA_Salv MP00482 AAAAAATGACCGTTG
SmilChr03G002836 Chr03 NC_080389.1:44872589-44872603in promoter 3426-3440 bp - 561 bp upstream of target TSS 99.2/ 100 1 44869156-44872028(-) SMil_00027448-RA_Salv MP00482 GAATTGTGACCGTTG
SmilChr06G000738 Chr06 NC_080392.1:6845291-6845305in promoter 1649-1663 bp + 2338 bp upstream of target TSS 99.2/ 100 1 6820627-6842953(-) SMil_00027448-RA_Salv MP00482 CAACGGTCATAATTT
SmilChr05G001910 Chr05 NC_080391.1:19369671-19369685in promoter 3756-3770 bp + 231 bp upstream of target TSS 99.0/ 100 3 19369916-19371708(+) SMil_00027448-RA_Salv MP00482 AAAAATTGACCGTTG
SmilChr05G001909 Chr05 NC_080391.1:19369671-19369685in promoter 2835-2849 bp + 1152 bp upstream of target TSS 99.0/ 100 3 19365804-19368519(-) SMil_00027448-RA_Salv MP00482 CAACGGTCAATTTTT
SmilChr06G000453 Chr06 NC_080392.1:3673375-3673389in promoter 3802-3816 bp + 185 bp upstream of target TSS 99.0/ 100 2 3673574-3675178(+) SMil_00027448-RA_Salv MP00482 AAAAACTGACCGTTG
SmilChr04G001533 Chr04 NC_080390.1:25248495-25248509in promoter 3768-3782 bp - 219 bp upstream of target TSS 99.0/ 100 2 25248728-25251709(+) SMil_00027448-RA_Salv MP00482 CAACGGTCAGTTTTT
SmilChr03G001779 Chr03 NC_080389.1:24302280-24302294in promoter 3324-3338 bp + 663 bp upstream of target TSS 99.0/ 100 2 24302957-24304005(+) SMil_00027448-RA_Salv MP00482 AAAAATTGACCGTTG
SmilChr02G002941 Chr02 NC_080388.1:49910979-49910993in promoter 2765-2779 bp - 1222 bp upstream of target TSS 99.0/ 100 2 49912215-49914291(+) SMil_00027448-RA_Salv MP00482 CAACGGTCAATTTTT
SmilChr06G000454 Chr06 NC_080392.1:3673375-3673389in promoter 1787-1801 bp + 2200 bp upstream of target TSS 99.0/ 100 2 3675589-3676510(+) SMil_00027448-RA_Salv MP00482 AAAAACTGACCGTTG
SmilChr06G002281 Chr06 NC_080392.1:32752873-32752887in promoter 3959-3973 bp + 28 bp upstream of target TSS 99.0/ 100 1 32752915-32754573(+) SMil_00027448-RA_Salv MP00482 AAAAACTGACCGTTG
SmilChr01G001545 Chr01 NC_080387.1:29448550-29448564in promoter 3817-3831 bp + 170 bp upstream of target TSS 99.0/ 100 1 29448734-29450543(+) SMil_00027448-RA_Salv MP00482 AAAAACTGACCGTTG
SmilChr06G001941 Chr06 NC_080392.1:23834905-23834919in promoter 3775-3789 bp - 212 bp upstream of target TSS 99.0/ 100 1 23831066-23834693(-) SMil_00027448-RA_Salv MP00482 AAAAACTGACCGTTG
SmilChr07G001202 Chr07 NC_080393.1:9168877-9168891in promoter 3139-3153 bp - 848 bp upstream of target TSS 99.0/ 100 1 9163015-9168029(-) SMil_00027448-RA_Salv MP00482 AAAAATTGACCGTTG
SmilChr01G000131 Chr01 NC_080387.1:2204240-2204254in promoter 2833-2847 bp + 1154 bp upstream of target TSS 99.0/ 100 1 2199994-2203086(-) SMil_00027448-RA_Salv MP00482 CAACGGCCATATTTC
SmilChr05G004258 Chr05 NC_080391.1:56387828-56387842in promoter 2524-2538 bp - 1463 bp upstream of target TSS 99.0/ 100 1 56382501-56386365(-) SMil_00027448-RA_Salv MP00482 AAAAACTGACCGTTG
SmilChr04G000269 Chr04 NC_080390.1:2459035-2459049in promoter 1941-1955 bp - 2046 bp upstream of target TSS 99.0/ 100 1 2461095-2498487(+) SMil_00027448-RA_Salv MP00482 CAACGGTCAATTTTT
SmilChr07G001203 Chr07 NC_080393.1:9168877-9168891in promoter 858-872 bp - 3129 bp upstream of target TSS 99.0/ 100 1 9172020-9177330(+) SMil_00027448-RA_Salv MP00482 CAACGGTCAATTTTT
SmilChr01G003182 Chr01 NC_080387.1:50608318-50608332in promoter 3665-3679 bp - 322 bp upstream of target TSS 98.9/ 100 1 50592708-50607996(-) SMil_00027448-RA_Salv MP00482 AAAATGTAACCGTTG
SmilChr02G002557 Chr02 NC_080388.1:44473717-44473731in promoter 3845-3859 bp + 142 bp upstream of target TSS 98.8/ 100 1 44473873-44500678(+) SMil_00027448-RA_Salv MP00482 CAAATTTGACCGTTG
SmilChr03G001346 Chr03 NC_080389.1:15714344-15714358in promoter 832-846 bp + 3155 bp upstream of target TSS 98.6/ 100 5 15709870-15711189(-) SMil_00027448-RA_Salv MP00482 CAACGGTTATATTTT
SmilChr06G002858 Chr06 NC_080392.1:41370110-41370124in promoter 3905-3919 bp - 82 bp upstream of target TSS 98.6/ 100 2 41370206-41373213(+) SMil_00027448-RA_Salv MP00482 CAACGGTCACATTCC
SmilChr08G004783 Chr08 NC_080394.1:57153478-57153492in promoter 3983-3997 bp - 4 bp upstream of target TSS 98.6/ 100 1 57149209-57153474(-) SMil_00027448-RA_Salv MP00482 ACAAAGTGACCGTTG
SmilChr02G004040 Chr02 NC_080388.1:62717257-62717271in promoter 3976-3990 bp + 11 bp upstream of target TSS 98.6/ 100 1 62717282-62719057(+) SMil_00027448-RA_Salv MP00482 AGAAAGTGACCGTTG
SmilChr08G000746 Chr08 NC_080394.1:5518303-5518317in promoter 3966-3980 bp - 21 bp upstream of target TSS 98.6/ 100 1 5515904-5518282(-) SMil_00027448-RA_Salv MP00482 AGAATATGACCGTTG
SmilChr01G002421 Chr01 NC_080387.1:41665170-41665184in promoter 3358-3372 bp - 629 bp upstream of target TSS 98.6/ 100 1 41662527-41664541(-) SMil_00027448-RA_Salv MP00482 AAAACATGACCGTTG
SmilChr04G000411 Chr04 NC_080390.1:4286900-4286914in promoter 1036-1050 bp - 2951 bp upstream of target TSS 98.6/ 100 1 4289865-4291808(+) SMil_00027448-RA_Salv MP00482 CAACGGTCACTTTCT
SmilChr08G001987 Chr08 NC_080394.1:17597382-17597396in promoter 3864-3878 bp - 123 bp upstream of target TSS 98.5/ 100 3 17595035-17597259(-) SMil_00027448-RA_Salv MP00482 TAAAAATGACCGTTG
SmilChr04G001385 Chr04 NC_080390.1:22521089-22521103in promoter 3646-3660 bp + 341 bp upstream of target TSS 98.5/ 100 3 22521444-22523065(+) SMil_00027448-RA_Salv MP00482 TAAAAATGACCGTTG
SmilChr02G004424 Chr02 NC_080388.1:66575704-66575718in promoter 2096-2110 bp - 1891 bp upstream of target TSS 98.5/ 100 3 66570968-66573813(-) SMil_00027448-RA_Salv MP00482 TAAATCTGACCGTTG
SmilChr03G002514 Chr03 NC_080389.1:40011304-40011318in promoter 3804-3818 bp - 183 bp upstream of target TSS 98.5/ 100 2 40011501-40012238(+) SMil_00027448-RA_Salv MP00482 CAACGGTCATTTTTA
SmilChr01G005650 Chr01 NC_080387.1:72889530-72889544in promoter 2478-2492 bp - 1509 bp upstream of target TSS 98.5/ 100 2 72886878-72888021(-) SMil_00027448-RA_Salv MP00482 AAAATATGACCGTTA
SmilChr04G003096 Chr04 NC_080390.1:47570729-47570743in promoter 68-82 bp + 3919 bp upstream of target TSS 98.5/ 100 2 47574662-47576809(+) SMil_00027448-RA_Salv MP00482 AAAATATGACCGTTA
SmilChr04G000036 Chr04 NC_080390.1:334920-334934in promoter 3705-3719 bp + 282 bp upstream of target TSS 98.5/ 100 1 335216-337791(+) SMil_00027448-RA_Salv MP00482 CAATTATGACCGTTG
SmilChr08G000932 Chr08 NC_080394.1:6907691-6907705in promoter 3587-3601 bp + 400 bp upstream of target TSS 98.5/ 100 1 6908105-6916562(+) SMil_00027448-RA_Salv MP00482 ATAAAGTGACCGTTG
SmilChr08G000934 Chr08 NC_080394.1:6927268-6927282in promoter 3587-3601 bp + 400 bp upstream of target TSS 98.5/ 100 1 6927682-6936138(+) SMil_00027448-RA_Salv MP00482 ATAAAGTGACCGTTG