Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr05G001980; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00003923-RA_Salv |
SmilChr05G001980 |
ARF | XP_057766076.1 |
MP00153 |
GCCGACAAAA |
9706 binding sites 6534 candidate target genes Page 1 / 131 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr03G000413 |
Chr03 | NC_080389.1:4455075-4455084in promoter 3937-3946 bp |
- | 55 bp upstream of target TSS | 100.0/ 100 | 5 | 4454107-4455020(-) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr01G003664 |
Chr01 | NC_080387.1:55065865-55065874in promoter 3661-3670 bp |
+ | 331 bp upstream of target TSS | 100.0/ 100 | 5 | 55061660-55065534(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G003927 |
Chr01 | NC_080387.1:57539891-57539900in promoter 1713-1722 bp |
+ | 2279 bp upstream of target TSS | 100.0/ 100 | 4 | 57542179-57551188(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G004732 |
Chr02 | NC_080388.1:69562242-69562251in promoter 3476-3485 bp |
- | 516 bp upstream of target TSS | 100.0/ 100 | 3 | 69555676-69561726(-) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr01G004267 |
Chr01 | NC_080387.1:60917346-60917355in promoter 1194-1203 bp |
- | 2798 bp upstream of target TSS | 100.0/ 100 | 3 | 60920153-60921247(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G003647 |
Chr01 | NC_080387.1:54945924-54945933in promoter 282-291 bp |
- | 3710 bp upstream of target TSS | 100.0/ 100 | 3 | 54949643-54949781(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G001048 |
Chr01 | NC_080387.1:21768723-21768732in promoter 202-211 bp |
- | 3790 bp upstream of target TSS | 100.0/ 100 | 3 | 21772522-21840439(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr02G000291 |
Chr02 | NC_080388.1:3697965-3697974in promoter 3949-3958 bp |
+ | 43 bp upstream of target TSS | 100.0/ 100 | 2 | 3698017-3723614(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G003941 |
Chr02 | NC_080388.1:61556103-61556112in promoter 3712-3721 bp |
- | 280 bp upstream of target TSS | 100.0/ 100 | 2 | 61556392-61633213(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G001119 |
Chr01 | NC_080387.1:22826263-22826272in promoter 3406-3415 bp |
+ | 586 bp upstream of target TSS | 100.0/ 100 | 2 | 22823266-22825677(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr02G002308 |
Chr02 | NC_080388.1:40693806-40693815in promoter 2443-2452 bp |
+ | 1549 bp upstream of target TSS | 100.0/ 100 | 2 | 40695364-40701609(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G005284 |
Chr02 | NC_080388.1:73883630-73883639in promoter 2325-2334 bp |
+ | 1667 bp upstream of target TSS | 100.0/ 100 | 2 | 73881104-73881963(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr02G004118 |
Chr02 | NC_080388.1:63469669-63469678in promoter 2240-2249 bp |
- | 1752 bp upstream of target TSS | 100.0/ 100 | 2 | 63471430-63473427(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G003790 |
Chr01 | NC_080387.1:56286289-56286298in promoter 1837-1846 bp |
- | 2155 bp upstream of target TSS | 100.0/ 100 | 2 | 56288453-56290831(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr03G000378 |
Chr03 | NC_080389.1:4227129-4227138in promoter 1350-1359 bp |
- | 2642 bp upstream of target TSS | 100.0/ 100 | 2 | 4229780-4233095(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G002070 |
Chr01 | NC_080387.1:36574272-36574281in promoter 1062-1071 bp |
- | 2930 bp upstream of target TSS | 100.0/ 100 | 2 | 36565220-36571342(-) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr03G000580 |
Chr03 | NC_080389.1:6432129-6432138in promoter 911-920 bp |
+ | 3081 bp upstream of target TSS | 100.0/ 100 | 2 | 6435219-6437864(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G003184 |
Chr02 | NC_080388.1:52982941-52982950in promoter 695-704 bp |
+ | 3297 bp upstream of target TSS | 100.0/ 100 | 2 | 52986247-52990483(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G005286 |
Chr02 | NC_080388.1:73883630-73883639in promoter 580-589 bp |
+ | 3412 bp upstream of target TSS | 100.0/ 100 | 2 | 73887051-73890068(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G002283 |
Chr02 | NC_080388.1:40301995-40302004in promoter 3984-3993 bp |
+ | 8 bp upstream of target TSS | 100.0/ 100 | 1 | 40302012-40303908(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G005058 |
Chr02 | NC_080388.1:72285618-72285627in promoter 3461-3470 bp |
+ | 531 bp upstream of target TSS | 100.0/ 100 | 1 | 72286158-72286228(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G003842 |
Chr02 | NC_080388.1:60154446-60154455in promoter 3450-3459 bp |
+ | 542 bp upstream of target TSS | 100.0/ 100 | 1 | 60149380-60153904(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G000624 |
Chr01 | NC_080387.1:13982867-13982876in promoter 2967-2976 bp |
- | 1025 bp upstream of target TSS | 100.0/ 100 | 1 | 13983901-13987114(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G006026 |
Chr01 | NC_080387.1:75829880-75829889in promoter 2846-2855 bp |
+ | 1146 bp upstream of target TSS | 100.0/ 100 | 1 | 75831035-75834081(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G005059 |
Chr02 | NC_080388.1:72285618-72285627in promoter 2716-2725 bp |
+ | 1276 bp upstream of target TSS | 100.0/ 100 | 1 | 72286903-72289223(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G001821 |
Chr02 | NC_080388.1:33081786-33081795in promoter 2699-2708 bp |
+ | 1293 bp upstream of target TSS | 100.0/ 100 | 1 | 33083088-33085529(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G004117 |
Chr02 | NC_080388.1:63469669-63469678in promoter 2679-2688 bp |
- | 1313 bp upstream of target TSS | 100.0/ 100 | 1 | 63462544-63468356(-) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr01G004266 |
Chr01 | NC_080387.1:60917346-60917355in promoter 2531-2540 bp |
- | 1461 bp upstream of target TSS | 100.0/ 100 | 1 | 60918816-60919703(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G005482 |
Chr01 | NC_080387.1:71785960-71785969in promoter 2199-2208 bp |
+ | 1793 bp upstream of target TSS | 100.0/ 100 | 1 | 71787762-71790309(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr01G001319 |
Chr01 | NC_080387.1:26221034-26221043in promoter 2015-2024 bp |
- | 1977 bp upstream of target TSS | 100.0/ 100 | 1 | 26216407-26219057(-) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G000482 |
Chr02 | NC_080388.1:6612444-6612453in promoter 1905-1914 bp |
+ | 2087 bp upstream of target TSS | 100.0/ 100 | 1 | 6599753-6610357(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr02G004851 |
Chr02 | NC_080388.1:70671074-70671083in promoter 1423-1432 bp |
+ | 2569 bp upstream of target TSS | 100.0/ 100 | 1 | 70673652-70678006(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr02G004293 |
Chr02 | NC_080388.1:65296303-65296312in promoter 1398-1407 bp |
+ | 2594 bp upstream of target TSS | 100.0/ 100 | 1 | 65292844-65293709(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr02G000628 |
Chr02 | NC_080388.1:9452563-9452572in promoter 1171-1180 bp |
- | 2821 bp upstream of target TSS | 100.0/ 100 | 1 | 9455393-9456815(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr01G001012 |
Chr01 | NC_080387.1:21295158-21295167in promoter 345-354 bp |
+ | 3647 bp upstream of target TSS | 100.0/ 100 | 1 | 21288277-21291511(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGC |
SmilChr02G004766 |
Chr02 | NC_080388.1:69834350-69834359in promoter 310-319 bp |
+ | 3682 bp upstream of target TSS | 100.0/ 100 | 1 | 69838041-69843112(+) |
SMil_00003923-RA_Salv |
MP00153 |
GCCGACAAGA |
SmilChr01G002085 |
Chr01 | NC_080387.1:36821059-36821068in promoter 2826-2835 bp |
- | 1166 bp upstream of target TSS | 99.6/ 100 | 5 | 36818949-36819893(-) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |
SmilChr01G003088 |
Chr01 | NC_080387.1:49703010-49703019in promoter 2658-2667 bp |
- | 1334 bp upstream of target TSS | 99.6/ 100 | 4 | 49704353-49705442(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr02G002685 |
Chr02 | NC_080388.1:46490548-46490557in promoter 1596-1605 bp |
- | 2396 bp upstream of target TSS | 99.6/ 100 | 4 | 46492953-46495890(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr02G005457 |
Chr02 | NC_080388.1:74889038-74889047in promoter 3630-3639 bp |
+ | 362 bp upstream of target TSS | 99.6/ 100 | 3 | 74889409-74896486(+) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |
SmilChr01G001843 |
Chr01 | NC_080387.1:33371387-33371396in promoter 3310-3319 bp |
+ | 682 bp upstream of target TSS | 99.6/ 100 | 3 | 33369833-33370705(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr03G000613 |
Chr03 | NC_080389.1:6804891-6804900in promoter 3278-3287 bp |
- | 714 bp upstream of target TSS | 99.6/ 100 | 3 | 6800230-6804177(-) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |
SmilChr02G000809 |
Chr02 | NC_080388.1:13560197-13560206in promoter 2994-3003 bp |
- | 998 bp upstream of target TSS | 99.6/ 100 | 3 | 13556601-13559199(-) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |
SmilChr02G003287 |
Chr02 | NC_080388.1:54154609-54154618in promoter 2953-2962 bp |
+ | 1039 bp upstream of target TSS | 99.6/ 100 | 3 | 54152305-54153570(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr01G002077 |
Chr01 | NC_080387.1:36722322-36722331in promoter 2927-2936 bp |
+ | 1065 bp upstream of target TSS | 99.6/ 100 | 3 | 36723396-36724475(+) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |
SmilChr01G002753 |
Chr01 | NC_080387.1:45852090-45852099in promoter 2022-2031 bp |
+ | 1970 bp upstream of target TSS | 99.6/ 100 | 3 | 45847328-45850120(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr03G000614 |
Chr03 | NC_080389.1:6808014-6808023in promoter 1886-1895 bp |
- | 2106 bp upstream of target TSS | 99.6/ 100 | 3 | 6804871-6805908(-) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |
SmilChr01G001842 |
Chr01 | NC_080387.1:33371387-33371396in promoter 1749-1758 bp |
+ | 2243 bp upstream of target TSS | 99.6/ 100 | 3 | 33362876-33369144(-) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr01G001614 |
Chr01 | NC_080387.1:30271923-30271932in promoter 1433-1442 bp |
- | 2559 bp upstream of target TSS | 99.6/ 100 | 3 | 30274491-30275147(+) |
SMil_00003923-RA_Salv |
MP00153 |
TCTTGTCGGG |
SmilChr02G000857 |
Chr02 | NC_080388.1:14641292-14641301in promoter 1244-1253 bp |
- | 2748 bp upstream of target TSS | 99.6/ 100 | 3 | 14637642-14638544(-) |
SMil_00003923-RA_Salv |
MP00153 |
CCCGACAAGA |