TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr05G001980; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00003923-RA_Salv SmilChr05G001980 ARF XP_057766076.1 MP00153 GCCGACAAAA

Predicted Target Genes

9706 binding sites 6534 candidate target genes Page 1 / 131 Download TSV

1 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr03G000413 Chr03 NC_080389.1:4455075-4455084in promoter 3937-3946 bp - 55 bp upstream of target TSS 100.0/ 100 5 4454107-4455020(-) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr01G003664 Chr01 NC_080387.1:55065865-55065874in promoter 3661-3670 bp + 331 bp upstream of target TSS 100.0/ 100 5 55061660-55065534(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G003927 Chr01 NC_080387.1:57539891-57539900in promoter 1713-1722 bp + 2279 bp upstream of target TSS 100.0/ 100 4 57542179-57551188(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G004732 Chr02 NC_080388.1:69562242-69562251in promoter 3476-3485 bp - 516 bp upstream of target TSS 100.0/ 100 3 69555676-69561726(-) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr01G004267 Chr01 NC_080387.1:60917346-60917355in promoter 1194-1203 bp - 2798 bp upstream of target TSS 100.0/ 100 3 60920153-60921247(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G003647 Chr01 NC_080387.1:54945924-54945933in promoter 282-291 bp - 3710 bp upstream of target TSS 100.0/ 100 3 54949643-54949781(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G001048 Chr01 NC_080387.1:21768723-21768732in promoter 202-211 bp - 3790 bp upstream of target TSS 100.0/ 100 3 21772522-21840439(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr02G000291 Chr02 NC_080388.1:3697965-3697974in promoter 3949-3958 bp + 43 bp upstream of target TSS 100.0/ 100 2 3698017-3723614(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G003941 Chr02 NC_080388.1:61556103-61556112in promoter 3712-3721 bp - 280 bp upstream of target TSS 100.0/ 100 2 61556392-61633213(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G001119 Chr01 NC_080387.1:22826263-22826272in promoter 3406-3415 bp + 586 bp upstream of target TSS 100.0/ 100 2 22823266-22825677(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr02G002308 Chr02 NC_080388.1:40693806-40693815in promoter 2443-2452 bp + 1549 bp upstream of target TSS 100.0/ 100 2 40695364-40701609(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G005284 Chr02 NC_080388.1:73883630-73883639in promoter 2325-2334 bp + 1667 bp upstream of target TSS 100.0/ 100 2 73881104-73881963(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr02G004118 Chr02 NC_080388.1:63469669-63469678in promoter 2240-2249 bp - 1752 bp upstream of target TSS 100.0/ 100 2 63471430-63473427(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G003790 Chr01 NC_080387.1:56286289-56286298in promoter 1837-1846 bp - 2155 bp upstream of target TSS 100.0/ 100 2 56288453-56290831(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr03G000378 Chr03 NC_080389.1:4227129-4227138in promoter 1350-1359 bp - 2642 bp upstream of target TSS 100.0/ 100 2 4229780-4233095(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G002070 Chr01 NC_080387.1:36574272-36574281in promoter 1062-1071 bp - 2930 bp upstream of target TSS 100.0/ 100 2 36565220-36571342(-) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr03G000580 Chr03 NC_080389.1:6432129-6432138in promoter 911-920 bp + 3081 bp upstream of target TSS 100.0/ 100 2 6435219-6437864(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G003184 Chr02 NC_080388.1:52982941-52982950in promoter 695-704 bp + 3297 bp upstream of target TSS 100.0/ 100 2 52986247-52990483(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G005286 Chr02 NC_080388.1:73883630-73883639in promoter 580-589 bp + 3412 bp upstream of target TSS 100.0/ 100 2 73887051-73890068(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G002283 Chr02 NC_080388.1:40301995-40302004in promoter 3984-3993 bp + 8 bp upstream of target TSS 100.0/ 100 1 40302012-40303908(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G005058 Chr02 NC_080388.1:72285618-72285627in promoter 3461-3470 bp + 531 bp upstream of target TSS 100.0/ 100 1 72286158-72286228(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G003842 Chr02 NC_080388.1:60154446-60154455in promoter 3450-3459 bp + 542 bp upstream of target TSS 100.0/ 100 1 60149380-60153904(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G000624 Chr01 NC_080387.1:13982867-13982876in promoter 2967-2976 bp - 1025 bp upstream of target TSS 100.0/ 100 1 13983901-13987114(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G006026 Chr01 NC_080387.1:75829880-75829889in promoter 2846-2855 bp + 1146 bp upstream of target TSS 100.0/ 100 1 75831035-75834081(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G005059 Chr02 NC_080388.1:72285618-72285627in promoter 2716-2725 bp + 1276 bp upstream of target TSS 100.0/ 100 1 72286903-72289223(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G001821 Chr02 NC_080388.1:33081786-33081795in promoter 2699-2708 bp + 1293 bp upstream of target TSS 100.0/ 100 1 33083088-33085529(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G004117 Chr02 NC_080388.1:63469669-63469678in promoter 2679-2688 bp - 1313 bp upstream of target TSS 100.0/ 100 1 63462544-63468356(-) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr01G004266 Chr01 NC_080387.1:60917346-60917355in promoter 2531-2540 bp - 1461 bp upstream of target TSS 100.0/ 100 1 60918816-60919703(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G005482 Chr01 NC_080387.1:71785960-71785969in promoter 2199-2208 bp + 1793 bp upstream of target TSS 100.0/ 100 1 71787762-71790309(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr01G001319 Chr01 NC_080387.1:26221034-26221043in promoter 2015-2024 bp - 1977 bp upstream of target TSS 100.0/ 100 1 26216407-26219057(-) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G000482 Chr02 NC_080388.1:6612444-6612453in promoter 1905-1914 bp + 2087 bp upstream of target TSS 100.0/ 100 1 6599753-6610357(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr02G004851 Chr02 NC_080388.1:70671074-70671083in promoter 1423-1432 bp + 2569 bp upstream of target TSS 100.0/ 100 1 70673652-70678006(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr02G004293 Chr02 NC_080388.1:65296303-65296312in promoter 1398-1407 bp + 2594 bp upstream of target TSS 100.0/ 100 1 65292844-65293709(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr02G000628 Chr02 NC_080388.1:9452563-9452572in promoter 1171-1180 bp - 2821 bp upstream of target TSS 100.0/ 100 1 9455393-9456815(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr01G001012 Chr01 NC_080387.1:21295158-21295167in promoter 345-354 bp + 3647 bp upstream of target TSS 100.0/ 100 1 21288277-21291511(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGC
SmilChr02G004766 Chr02 NC_080388.1:69834350-69834359in promoter 310-319 bp + 3682 bp upstream of target TSS 100.0/ 100 1 69838041-69843112(+) SMil_00003923-RA_Salv MP00153 GCCGACAAGA
SmilChr01G002085 Chr01 NC_080387.1:36821059-36821068in promoter 2826-2835 bp - 1166 bp upstream of target TSS 99.6/ 100 5 36818949-36819893(-) SMil_00003923-RA_Salv MP00153 CCCGACAAGA
SmilChr01G003088 Chr01 NC_080387.1:49703010-49703019in promoter 2658-2667 bp - 1334 bp upstream of target TSS 99.6/ 100 4 49704353-49705442(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr02G002685 Chr02 NC_080388.1:46490548-46490557in promoter 1596-1605 bp - 2396 bp upstream of target TSS 99.6/ 100 4 46492953-46495890(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr02G005457 Chr02 NC_080388.1:74889038-74889047in promoter 3630-3639 bp + 362 bp upstream of target TSS 99.6/ 100 3 74889409-74896486(+) SMil_00003923-RA_Salv MP00153 CCCGACAAGA
SmilChr01G001843 Chr01 NC_080387.1:33371387-33371396in promoter 3310-3319 bp + 682 bp upstream of target TSS 99.6/ 100 3 33369833-33370705(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr03G000613 Chr03 NC_080389.1:6804891-6804900in promoter 3278-3287 bp - 714 bp upstream of target TSS 99.6/ 100 3 6800230-6804177(-) SMil_00003923-RA_Salv MP00153 CCCGACAAGA
SmilChr02G000809 Chr02 NC_080388.1:13560197-13560206in promoter 2994-3003 bp - 998 bp upstream of target TSS 99.6/ 100 3 13556601-13559199(-) SMil_00003923-RA_Salv MP00153 CCCGACAAGA
SmilChr02G003287 Chr02 NC_080388.1:54154609-54154618in promoter 2953-2962 bp + 1039 bp upstream of target TSS 99.6/ 100 3 54152305-54153570(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr01G002077 Chr01 NC_080387.1:36722322-36722331in promoter 2927-2936 bp + 1065 bp upstream of target TSS 99.6/ 100 3 36723396-36724475(+) SMil_00003923-RA_Salv MP00153 CCCGACAAGA
SmilChr01G002753 Chr01 NC_080387.1:45852090-45852099in promoter 2022-2031 bp + 1970 bp upstream of target TSS 99.6/ 100 3 45847328-45850120(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr03G000614 Chr03 NC_080389.1:6808014-6808023in promoter 1886-1895 bp - 2106 bp upstream of target TSS 99.6/ 100 3 6804871-6805908(-) SMil_00003923-RA_Salv MP00153 CCCGACAAGA
SmilChr01G001842 Chr01 NC_080387.1:33371387-33371396in promoter 1749-1758 bp + 2243 bp upstream of target TSS 99.6/ 100 3 33362876-33369144(-) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr01G001614 Chr01 NC_080387.1:30271923-30271932in promoter 1433-1442 bp - 2559 bp upstream of target TSS 99.6/ 100 3 30274491-30275147(+) SMil_00003923-RA_Salv MP00153 TCTTGTCGGG
SmilChr02G000857 Chr02 NC_080388.1:14641292-14641301in promoter 1244-1253 bp - 2748 bp upstream of target TSS 99.6/ 100 3 14637642-14638544(-) SMil_00003923-RA_Salv MP00153 CCCGACAAGA