TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr03G001606; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00016473-RA_Salv SmilChr03G001606 WRKY XP_057802772.1 MP00539 TCGTTGACTTTTTT

Predicted Target Genes

9848 binding sites 7338 candidate target genes Page 2 / 147 Download TSV

Previous 2 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr01G001103 Chr01 NC_080387.1:22579505-22579518in promoter 951-964 bp - 3037 bp upstream of target TSS 98.3/ 100 1 22569983-22576468(-) SMil_00016473-RA_Salv MP00539 CCGTTGACCTTTGT
SmilChr02G001363 Chr02 NC_080388.1:25617202-25617215in promoter 778-791 bp - 3210 bp upstream of target TSS 98.3/ 100 1 25607442-25613992(-) SMil_00016473-RA_Salv MP00539 TCGTTGACCTTTTC
SmilChr01G001805 Chr01 NC_080387.1:32973273-32973286in promoter 219-232 bp + 3769 bp upstream of target TSS 98.3/ 100 1 32977055-32979274(+) SMil_00016473-RA_Salv MP00539 CCGTTGACTTTCCC
SmilChr02G000233 Chr02 NC_080388.1:3014262-3014275in promoter 214-227 bp - 3774 bp upstream of target TSS 98.3/ 100 1 3006992-3010488(-) SMil_00016473-RA_Salv MP00539 CCGTTGACCTTTGC
SmilChr02G000642 Chr02 NC_080388.1:9707433-9707446in promoter 854-867 bp + 3134 bp upstream of target TSS 98.2/ 100 5 9710580-9716954(+) SMil_00016473-RA_Salv MP00539 ACGTTGACTTTTGT
SmilChr03G000504 Chr03 NC_080389.1:5433370-5433383in promoter 3074-3087 bp + 914 bp upstream of target TSS 98.2/ 100 4 5434297-5437684(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G003074 Chr02 NC_080388.1:51641994-51642007in promoter 2855-2868 bp + 1133 bp upstream of target TSS 98.2/ 100 4 51643140-51644435(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G004519 Chr01 NC_080387.1:63310430-63310443in promoter 1470-1483 bp + 2518 bp upstream of target TSS 98.2/ 100 4 63312961-63315870(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G001495 Chr01 NC_080387.1:28809198-28809211in promoter 349-362 bp - 3639 bp upstream of target TSS 98.2/ 100 4 28804866-28805559(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G001431 Chr02 NC_080388.1:27016354-27016367in promoter 24-37 bp + 3964 bp upstream of target TSS 98.2/ 100 4 27008909-27012390(-) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr03G003480 Chr03 NC_080389.1:53348394-53348407in promoter 3586-3599 bp - 402 bp upstream of target TSS 98.2/ 100 3 53348809-53359732(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr02G000285 Chr02 NC_080388.1:3647001-3647014in promoter 3560-3573 bp - 428 bp upstream of target TSS 98.2/ 100 3 3641492-3646573(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr03G001309 Chr03 NC_080389.1:15382363-15382376in promoter 3552-3565 bp - 436 bp upstream of target TSS 98.2/ 100 3 15382812-15388809(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G003394 Chr01 NC_080387.1:52660358-52660371in promoter 3400-3413 bp + 588 bp upstream of target TSS 98.2/ 100 3 52660959-52662894(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G002870 Chr01 NC_080387.1:47308135-47308148in promoter 3321-3334 bp + 667 bp upstream of target TSS 98.2/ 100 3 47308815-47312567(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G001496 Chr01 NC_080387.1:28809198-28809211in promoter 3225-3238 bp - 763 bp upstream of target TSS 98.2/ 100 3 28809974-28814378(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G001192 Chr01 NC_080387.1:24057243-24057256in promoter 2902-2915 bp - 1086 bp upstream of target TSS 98.2/ 100 3 24058342-24059483(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr03G002694 Chr03 NC_080389.1:42935135-42935148in promoter 2307-2320 bp - 1681 bp upstream of target TSS 98.2/ 100 3 42900243-42933454(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G004958 Chr01 NC_080387.1:67676799-67676812in promoter 2230-2243 bp + 1758 bp upstream of target TSS 98.2/ 100 3 67678570-67681247(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr03G003031 Chr03 NC_080389.1:47231010-47231023in promoter 1890-1903 bp - 2098 bp upstream of target TSS 98.2/ 100 3 47225785-47228912(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G003391 Chr01 NC_080387.1:52626794-52626807in promoter 1727-1740 bp + 2261 bp upstream of target TSS 98.2/ 100 3 52629068-52631558(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G001233 Chr01 NC_080387.1:24759739-24759752in promoter 1447-1460 bp - 2541 bp upstream of target TSS 98.2/ 100 3 24762293-24763434(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G005476 Chr01 NC_080387.1:71752227-71752240in promoter 1357-1370 bp - 2631 bp upstream of target TSS 98.2/ 100 3 71741721-71749596(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G002812 Chr01 NC_080387.1:46668075-46668088in promoter 1144-1157 bp - 2844 bp upstream of target TSS 98.2/ 100 3 46663315-46665231(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G005674 Chr01 NC_080387.1:73014998-73015011in promoter 735-748 bp + 3253 bp upstream of target TSS 98.2/ 100 3 73018264-73019041(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr04G002819 Chr04 NC_080390.1:44252245-44252258in promoter 3860-3873 bp - 128 bp upstream of target TSS 98.2/ 100 2 44250277-44252117(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G002127 Chr01 NC_080387.1:37279127-37279140in promoter 3837-3850 bp + 151 bp upstream of target TSS 98.2/ 100 2 37279291-37283213(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G002851 Chr02 NC_080388.1:48680162-48680175in promoter 3812-3825 bp + 176 bp upstream of target TSS 98.2/ 100 2 48680351-48684323(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G003267 Chr02 NC_080388.1:53936651-53936664in promoter 3773-3786 bp + 215 bp upstream of target TSS 98.2/ 100 2 53936879-53938637(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr03G004001 Chr03 NC_080389.1:59043294-59043307in promoter 3747-3760 bp - 241 bp upstream of target TSS 98.2/ 100 2 59038436-59043053(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G003093 Chr02 NC_080388.1:51792647-51792660in promoter 3739-3752 bp - 249 bp upstream of target TSS 98.2/ 100 2 51789092-51792398(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G004772 Chr02 NC_080388.1:69891709-69891722in promoter 3575-3588 bp - 413 bp upstream of target TSS 98.2/ 100 2 69892135-69895808(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G003578 Chr01 NC_080387.1:54365267-54365280in promoter 3495-3508 bp + 493 bp upstream of target TSS 98.2/ 100 2 54365773-54368215(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G003924 Chr02 NC_080388.1:61318013-61318026in promoter 3403-3416 bp + 585 bp upstream of target TSS 98.2/ 100 2 61318611-61324376(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G003849 Chr02 NC_080388.1:60236230-60236243in promoter 3376-3389 bp - 612 bp upstream of target TSS 98.2/ 100 2 60233021-60235618(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G004166 Chr02 NC_080388.1:63973933-63973946in promoter 3191-3204 bp - 797 bp upstream of target TSS 98.2/ 100 2 63971723-63973136(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G000325 Chr01 NC_080387.1:6538787-6538800in promoter 3132-3145 bp - 856 bp upstream of target TSS 98.2/ 100 2 6539656-6559465(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G003197 Chr01 NC_080387.1:50739925-50739938in promoter 3080-3093 bp - 908 bp upstream of target TSS 98.2/ 100 2 50734261-50739017(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr01G002359 Chr01 NC_080387.1:40760088-40760101in promoter 2948-2961 bp + 1040 bp upstream of target TSS 98.2/ 100 2 40761141-40763492(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr04G001722 Chr04 NC_080390.1:28484648-28484661in promoter 2942-2955 bp + 1046 bp upstream of target TSS 98.2/ 100 2 28482472-28483602(-) SMil_00016473-RA_Salv MP00539 TGAAAAGTCAACGA
SmilChr01G001748 Chr01 NC_080387.1:32220201-32220214in promoter 2801-2814 bp - 1187 bp upstream of target TSS 98.2/ 100 2 32221401-32235748(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr04G001982 Chr04 NC_080390.1:32094117-32094130in promoter 2442-2455 bp - 1546 bp upstream of target TSS 98.2/ 100 2 32090842-32092571(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr03G001170 Chr03 NC_080389.1:13457457-13457470in promoter 2186-2199 bp + 1802 bp upstream of target TSS 98.2/ 100 2 13459272-13460810(+) SMil_00016473-RA_Salv MP00539 CCGTTGACTATTTT
SmilChr04G001681 Chr04 NC_080390.1:27828958-27828971in promoter 2065-2078 bp + 1923 bp upstream of target TSS 98.2/ 100 2 27830894-27831947(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G002850 Chr02 NC_080388.1:48679880-48679893in promoter 2042-2055 bp - 1946 bp upstream of target TSS 98.2/ 100 2 48674009-48677934(-) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr02G002332 Chr02 NC_080388.1:41019482-41019495in promoter 1961-1974 bp + 2027 bp upstream of target TSS 98.2/ 100 2 41016474-41017455(-) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G001749 Chr01 NC_080387.1:32220201-32220214in promoter 1789-1802 bp - 2199 bp upstream of target TSS 98.2/ 100 2 32222413-32224941(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr02G003467 Chr02 NC_080388.1:55970487-55970500in promoter 1694-1707 bp + 2294 bp upstream of target TSS 98.2/ 100 2 55972794-55975525(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT
SmilChr03G004002 Chr03 NC_080389.1:59043294-59043307in promoter 1565-1578 bp - 2423 bp upstream of target TSS 98.2/ 100 2 59045730-59048398(+) SMil_00016473-RA_Salv MP00539 ATAAAAGTCAACGA
SmilChr01G003826 Chr01 NC_080387.1:56591296-56591309in promoter 1307-1320 bp + 2681 bp upstream of target TSS 98.2/ 100 2 56593990-56598392(+) SMil_00016473-RA_Salv MP00539 TCGTTGACTTTTAT