Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr03G001606; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00016473-RA_Salv |
SmilChr03G001606 |
WRKY | XP_057802772.1 |
MP00539 |
TCGTTGACTTTTTT |
9848 binding sites 7338 candidate target genes Page 2 / 147 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr01G001103 |
Chr01 | NC_080387.1:22579505-22579518in promoter 951-964 bp |
- | 3037 bp upstream of target TSS | 98.3/ 100 | 1 | 22569983-22576468(-) |
SMil_00016473-RA_Salv |
MP00539 |
CCGTTGACCTTTGT |
SmilChr02G001363 |
Chr02 | NC_080388.1:25617202-25617215in promoter 778-791 bp |
- | 3210 bp upstream of target TSS | 98.3/ 100 | 1 | 25607442-25613992(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACCTTTTC |
SmilChr01G001805 |
Chr01 | NC_080387.1:32973273-32973286in promoter 219-232 bp |
+ | 3769 bp upstream of target TSS | 98.3/ 100 | 1 | 32977055-32979274(+) |
SMil_00016473-RA_Salv |
MP00539 |
CCGTTGACTTTCCC |
SmilChr02G000233 |
Chr02 | NC_080388.1:3014262-3014275in promoter 214-227 bp |
- | 3774 bp upstream of target TSS | 98.3/ 100 | 1 | 3006992-3010488(-) |
SMil_00016473-RA_Salv |
MP00539 |
CCGTTGACCTTTGC |
SmilChr02G000642 |
Chr02 | NC_080388.1:9707433-9707446in promoter 854-867 bp |
+ | 3134 bp upstream of target TSS | 98.2/ 100 | 5 | 9710580-9716954(+) |
SMil_00016473-RA_Salv |
MP00539 |
ACGTTGACTTTTGT |
SmilChr03G000504 |
Chr03 | NC_080389.1:5433370-5433383in promoter 3074-3087 bp |
+ | 914 bp upstream of target TSS | 98.2/ 100 | 4 | 5434297-5437684(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G003074 |
Chr02 | NC_080388.1:51641994-51642007in promoter 2855-2868 bp |
+ | 1133 bp upstream of target TSS | 98.2/ 100 | 4 | 51643140-51644435(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G004519 |
Chr01 | NC_080387.1:63310430-63310443in promoter 1470-1483 bp |
+ | 2518 bp upstream of target TSS | 98.2/ 100 | 4 | 63312961-63315870(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G001495 |
Chr01 | NC_080387.1:28809198-28809211in promoter 349-362 bp |
- | 3639 bp upstream of target TSS | 98.2/ 100 | 4 | 28804866-28805559(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G001431 |
Chr02 | NC_080388.1:27016354-27016367in promoter 24-37 bp |
+ | 3964 bp upstream of target TSS | 98.2/ 100 | 4 | 27008909-27012390(-) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr03G003480 |
Chr03 | NC_080389.1:53348394-53348407in promoter 3586-3599 bp |
- | 402 bp upstream of target TSS | 98.2/ 100 | 3 | 53348809-53359732(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr02G000285 |
Chr02 | NC_080388.1:3647001-3647014in promoter 3560-3573 bp |
- | 428 bp upstream of target TSS | 98.2/ 100 | 3 | 3641492-3646573(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr03G001309 |
Chr03 | NC_080389.1:15382363-15382376in promoter 3552-3565 bp |
- | 436 bp upstream of target TSS | 98.2/ 100 | 3 | 15382812-15388809(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G003394 |
Chr01 | NC_080387.1:52660358-52660371in promoter 3400-3413 bp |
+ | 588 bp upstream of target TSS | 98.2/ 100 | 3 | 52660959-52662894(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G002870 |
Chr01 | NC_080387.1:47308135-47308148in promoter 3321-3334 bp |
+ | 667 bp upstream of target TSS | 98.2/ 100 | 3 | 47308815-47312567(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G001496 |
Chr01 | NC_080387.1:28809198-28809211in promoter 3225-3238 bp |
- | 763 bp upstream of target TSS | 98.2/ 100 | 3 | 28809974-28814378(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G001192 |
Chr01 | NC_080387.1:24057243-24057256in promoter 2902-2915 bp |
- | 1086 bp upstream of target TSS | 98.2/ 100 | 3 | 24058342-24059483(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr03G002694 |
Chr03 | NC_080389.1:42935135-42935148in promoter 2307-2320 bp |
- | 1681 bp upstream of target TSS | 98.2/ 100 | 3 | 42900243-42933454(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G004958 |
Chr01 | NC_080387.1:67676799-67676812in promoter 2230-2243 bp |
+ | 1758 bp upstream of target TSS | 98.2/ 100 | 3 | 67678570-67681247(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr03G003031 |
Chr03 | NC_080389.1:47231010-47231023in promoter 1890-1903 bp |
- | 2098 bp upstream of target TSS | 98.2/ 100 | 3 | 47225785-47228912(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G003391 |
Chr01 | NC_080387.1:52626794-52626807in promoter 1727-1740 bp |
+ | 2261 bp upstream of target TSS | 98.2/ 100 | 3 | 52629068-52631558(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G001233 |
Chr01 | NC_080387.1:24759739-24759752in promoter 1447-1460 bp |
- | 2541 bp upstream of target TSS | 98.2/ 100 | 3 | 24762293-24763434(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G005476 |
Chr01 | NC_080387.1:71752227-71752240in promoter 1357-1370 bp |
- | 2631 bp upstream of target TSS | 98.2/ 100 | 3 | 71741721-71749596(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G002812 |
Chr01 | NC_080387.1:46668075-46668088in promoter 1144-1157 bp |
- | 2844 bp upstream of target TSS | 98.2/ 100 | 3 | 46663315-46665231(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G005674 |
Chr01 | NC_080387.1:73014998-73015011in promoter 735-748 bp |
+ | 3253 bp upstream of target TSS | 98.2/ 100 | 3 | 73018264-73019041(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr04G002819 |
Chr04 | NC_080390.1:44252245-44252258in promoter 3860-3873 bp |
- | 128 bp upstream of target TSS | 98.2/ 100 | 2 | 44250277-44252117(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G002127 |
Chr01 | NC_080387.1:37279127-37279140in promoter 3837-3850 bp |
+ | 151 bp upstream of target TSS | 98.2/ 100 | 2 | 37279291-37283213(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G002851 |
Chr02 | NC_080388.1:48680162-48680175in promoter 3812-3825 bp |
+ | 176 bp upstream of target TSS | 98.2/ 100 | 2 | 48680351-48684323(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G003267 |
Chr02 | NC_080388.1:53936651-53936664in promoter 3773-3786 bp |
+ | 215 bp upstream of target TSS | 98.2/ 100 | 2 | 53936879-53938637(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr03G004001 |
Chr03 | NC_080389.1:59043294-59043307in promoter 3747-3760 bp |
- | 241 bp upstream of target TSS | 98.2/ 100 | 2 | 59038436-59043053(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G003093 |
Chr02 | NC_080388.1:51792647-51792660in promoter 3739-3752 bp |
- | 249 bp upstream of target TSS | 98.2/ 100 | 2 | 51789092-51792398(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G004772 |
Chr02 | NC_080388.1:69891709-69891722in promoter 3575-3588 bp |
- | 413 bp upstream of target TSS | 98.2/ 100 | 2 | 69892135-69895808(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G003578 |
Chr01 | NC_080387.1:54365267-54365280in promoter 3495-3508 bp |
+ | 493 bp upstream of target TSS | 98.2/ 100 | 2 | 54365773-54368215(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G003924 |
Chr02 | NC_080388.1:61318013-61318026in promoter 3403-3416 bp |
+ | 585 bp upstream of target TSS | 98.2/ 100 | 2 | 61318611-61324376(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G003849 |
Chr02 | NC_080388.1:60236230-60236243in promoter 3376-3389 bp |
- | 612 bp upstream of target TSS | 98.2/ 100 | 2 | 60233021-60235618(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G004166 |
Chr02 | NC_080388.1:63973933-63973946in promoter 3191-3204 bp |
- | 797 bp upstream of target TSS | 98.2/ 100 | 2 | 63971723-63973136(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G000325 |
Chr01 | NC_080387.1:6538787-6538800in promoter 3132-3145 bp |
- | 856 bp upstream of target TSS | 98.2/ 100 | 2 | 6539656-6559465(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G003197 |
Chr01 | NC_080387.1:50739925-50739938in promoter 3080-3093 bp |
- | 908 bp upstream of target TSS | 98.2/ 100 | 2 | 50734261-50739017(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr01G002359 |
Chr01 | NC_080387.1:40760088-40760101in promoter 2948-2961 bp |
+ | 1040 bp upstream of target TSS | 98.2/ 100 | 2 | 40761141-40763492(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr04G001722 |
Chr04 | NC_080390.1:28484648-28484661in promoter 2942-2955 bp |
+ | 1046 bp upstream of target TSS | 98.2/ 100 | 2 | 28482472-28483602(-) |
SMil_00016473-RA_Salv |
MP00539 |
TGAAAAGTCAACGA |
SmilChr01G001748 |
Chr01 | NC_080387.1:32220201-32220214in promoter 2801-2814 bp |
- | 1187 bp upstream of target TSS | 98.2/ 100 | 2 | 32221401-32235748(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr04G001982 |
Chr04 | NC_080390.1:32094117-32094130in promoter 2442-2455 bp |
- | 1546 bp upstream of target TSS | 98.2/ 100 | 2 | 32090842-32092571(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr03G001170 |
Chr03 | NC_080389.1:13457457-13457470in promoter 2186-2199 bp |
+ | 1802 bp upstream of target TSS | 98.2/ 100 | 2 | 13459272-13460810(+) |
SMil_00016473-RA_Salv |
MP00539 |
CCGTTGACTATTTT |
SmilChr04G001681 |
Chr04 | NC_080390.1:27828958-27828971in promoter 2065-2078 bp |
+ | 1923 bp upstream of target TSS | 98.2/ 100 | 2 | 27830894-27831947(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G002850 |
Chr02 | NC_080388.1:48679880-48679893in promoter 2042-2055 bp |
- | 1946 bp upstream of target TSS | 98.2/ 100 | 2 | 48674009-48677934(-) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr02G002332 |
Chr02 | NC_080388.1:41019482-41019495in promoter 1961-1974 bp |
+ | 2027 bp upstream of target TSS | 98.2/ 100 | 2 | 41016474-41017455(-) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G001749 |
Chr01 | NC_080387.1:32220201-32220214in promoter 1789-1802 bp |
- | 2199 bp upstream of target TSS | 98.2/ 100 | 2 | 32222413-32224941(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr02G003467 |
Chr02 | NC_080388.1:55970487-55970500in promoter 1694-1707 bp |
+ | 2294 bp upstream of target TSS | 98.2/ 100 | 2 | 55972794-55975525(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |
SmilChr03G004002 |
Chr03 | NC_080389.1:59043294-59043307in promoter 1565-1578 bp |
- | 2423 bp upstream of target TSS | 98.2/ 100 | 2 | 59045730-59048398(+) |
SMil_00016473-RA_Salv |
MP00539 |
ATAAAAGTCAACGA |
SmilChr01G003826 |
Chr01 | NC_080387.1:56591296-56591309in promoter 1307-1320 bp |
+ | 2681 bp upstream of target TSS | 98.2/ 100 | 2 | 56593990-56598392(+) |
SMil_00016473-RA_Salv |
MP00539 |
TCGTTGACTTTTAT |