Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr05G000260; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00013647-RA_Salv |
SmilChr05G000260 |
bZIP | XP_057763683.1 |
MP00040 |
TGCTGACGTGGC |
9919 binding sites 6920 candidate target genes Page 2 / 139 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr03G004466 |
Chr03 | NC_080389.1:62718944-62718955in promoter 3052-3063 bp |
+ | 938 bp upstream of target TSS | 99.4/ 100 | 1 | 62719893-62722215(+) |
SMil_00013647-RA_Salv |
MP00040 |
CGCTGACGTGGG |
SmilChr04G004164 |
Chr04 | NC_080390.1:56307176-56307187in promoter 1961-1972 bp |
- | 2029 bp upstream of target TSS | 99.4/ 100 | 1 | 56304289-56305147(-) |
SMil_00013647-RA_Salv |
MP00040 |
CGCTGACGTGGG |
SmilChr03G001529 |
Chr03 | NC_080389.1:19080780-19080791in promoter 1656-1667 bp |
+ | 2334 bp upstream of target TSS | 99.4/ 100 | 1 | 19077686-19078446(-) |
SMil_00013647-RA_Salv |
MP00040 |
CCCACGTCAGCC |
SmilChr04G001291 |
Chr04 | NC_080390.1:20571504-20571515in promoter 1352-1363 bp |
- | 2638 bp upstream of target TSS | 99.4/ 100 | 1 | 20574153-20576371(+) |
SMil_00013647-RA_Salv |
MP00040 |
CCCACGTCAGCC |
SmilChr01G001012 |
Chr01 | NC_080387.1:21293699-21293710in promoter 1802-1813 bp |
+ | 2188 bp upstream of target TSS | 99.3/ 100 | 5 | 21288277-21291511(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr02G001193 |
Chr02 | NC_080388.1:21957791-21957802in promoter 1619-1630 bp |
+ | 2371 bp upstream of target TSS | 99.3/ 100 | 5 | 21960173-21963698(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr01G000317 |
Chr01 | NC_080387.1:6166176-6166187in promoter 3598-3609 bp |
- | 392 bp upstream of target TSS | 99.3/ 100 | 4 | 6163128-6165784(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G001398 |
Chr04 | NC_080390.1:22772736-22772747in promoter 3378-3389 bp |
+ | 612 bp upstream of target TSS | 99.3/ 100 | 4 | 22773359-22773987(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr01G004345 |
Chr01 | NC_080387.1:61609454-61609465in promoter 3350-3361 bp |
- | 640 bp upstream of target TSS | 99.3/ 100 | 4 | 61610105-61613153(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr02G004293 |
Chr02 | NC_080388.1:65294841-65294852in promoter 2858-2869 bp |
+ | 1132 bp upstream of target TSS | 99.3/ 100 | 4 | 65292844-65293709(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr01G004344 |
Chr01 | NC_080387.1:61609049-61609060in promoter 2819-2830 bp |
- | 1171 bp upstream of target TSS | 99.3/ 100 | 4 | 61602473-61607878(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr01G000928 |
Chr01 | NC_080387.1:19665467-19665478in promoter 2310-2321 bp |
- | 1680 bp upstream of target TSS | 99.3/ 100 | 4 | 19661589-19663787(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr02G000357 |
Chr02 | NC_080388.1:4606521-4606532in promoter 572-583 bp |
+ | 3418 bp upstream of target TSS | 99.3/ 100 | 4 | 4601080-4603103(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr04G001397 |
Chr04 | NC_080390.1:22772736-22772747in promoter 185-196 bp |
+ | 3805 bp upstream of target TSS | 99.3/ 100 | 4 | 22767711-22768931(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr02G000358 |
Chr02 | NC_080388.1:4612051-4612062in promoter 170-181 bp |
+ | 3820 bp upstream of target TSS | 99.3/ 100 | 4 | 4615882-4618242(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G001010 |
Chr04 | NC_080390.1:14095758-14095769in promoter 3546-3557 bp |
+ | 444 bp upstream of target TSS | 99.3/ 100 | 3 | 14096213-14099180(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G002686 |
Chr04 | NC_080390.1:42292827-42292838in promoter 2260-2271 bp |
- | 1730 bp upstream of target TSS | 99.3/ 100 | 3 | 42294568-42297970(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr03G003906 |
Chr03 | NC_080389.1:58155995-58156006in promoter 1794-1805 bp |
- | 2196 bp upstream of target TSS | 99.3/ 100 | 3 | 58158202-58162638(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr04G002685 |
Chr04 | NC_080390.1:42292827-42292838in promoter 1546-1557 bp |
- | 2444 bp upstream of target TSS | 99.3/ 100 | 3 | 42288245-42290383(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr03G001651 |
Chr03 | NC_080389.1:21453760-21453771in promoter 1256-1267 bp |
+ | 2734 bp upstream of target TSS | 99.3/ 100 | 3 | 21449896-21451026(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr02G000720 |
Chr02 | NC_080388.1:11589367-11589378in promoter 1231-1242 bp |
- | 2759 bp upstream of target TSS | 99.3/ 100 | 3 | 11592137-11595069(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr01G003581 |
Chr01 | NC_080387.1:54378722-54378733in promoter 3940-3951 bp |
- | 50 bp upstream of target TSS | 99.3/ 100 | 2 | 54376761-54378672(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G001276 |
Chr04 | NC_080390.1:20291354-20291365in promoter 3660-3671 bp |
- | 330 bp upstream of target TSS | 99.3/ 100 | 2 | 20291695-20292501(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr03G003343 |
Chr03 | NC_080389.1:51766013-51766024in promoter 3403-3414 bp |
+ | 587 bp upstream of target TSS | 99.3/ 100 | 2 | 51757803-51765426(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr04G001275 |
Chr04 | NC_080390.1:20291354-20291365in promoter 2593-2604 bp |
- | 1397 bp upstream of target TSS | 99.3/ 100 | 2 | 20273678-20289957(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr02G003049 |
Chr02 | NC_080388.1:51285814-51285825in promoter 2375-2386 bp |
- | 1615 bp upstream of target TSS | 99.3/ 100 | 2 | 51287440-51289156(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr04G001009 |
Chr04 | NC_080390.1:14095758-14095769in promoter 2241-2252 bp |
+ | 1749 bp upstream of target TSS | 99.3/ 100 | 2 | 14090632-14094009(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr02G002733 |
Chr02 | NC_080388.1:47250652-47250663in promoter 2101-2112 bp |
+ | 1889 bp upstream of target TSS | 99.3/ 100 | 2 | 47252552-47261659(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G002490 |
Chr04 | NC_080390.1:39781214-39781225in promoter 1462-1473 bp |
- | 2528 bp upstream of target TSS | 99.3/ 100 | 2 | 39783753-39786583(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr04G003749 |
Chr04 | NC_080390.1:53768869-53768880in promoter 1181-1192 bp |
+ | 2809 bp upstream of target TSS | 99.3/ 100 | 2 | 53771689-53775979(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr03G002597 |
Chr03 | NC_080389.1:41275613-41275624in promoter 583-594 bp |
+ | 3407 bp upstream of target TSS | 99.3/ 100 | 2 | 41262782-41272206(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr03G000333 |
Chr03 | NC_080389.1:3774045-3774056in promoter 545-556 bp |
+ | 3445 bp upstream of target TSS | 99.3/ 100 | 2 | 3777501-3780755(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G000951 |
Chr04 | NC_080390.1:12589940-12589951in promoter 3959-3970 bp |
- | 31 bp upstream of target TSS | 99.3/ 100 | 1 | 12588461-12589909(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G003903 |
Chr04 | NC_080390.1:54801806-54801817in promoter 3946-3957 bp |
- | 44 bp upstream of target TSS | 99.3/ 100 | 1 | 54801861-54808607(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr01G005238 |
Chr01 | NC_080387.1:69944012-69944023in promoter 3935-3946 bp |
- | 55 bp upstream of target TSS | 99.3/ 100 | 1 | 69941803-69943957(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr02G002730 |
Chr02 | NC_080388.1:47214835-47214846in promoter 3928-3939 bp |
- | 62 bp upstream of target TSS | 99.3/ 100 | 1 | 47212111-47214773(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G004077 |
Chr04 | NC_080390.1:55841959-55841970in promoter 3844-3855 bp |
+ | 146 bp upstream of target TSS | 99.3/ 100 | 1 | 55842116-55846248(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr01G001487 |
Chr01 | NC_080387.1:28658826-28658837in promoter 3352-3363 bp |
+ | 638 bp upstream of target TSS | 99.3/ 100 | 1 | 28653686-28658188(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr03G003460 |
Chr03 | NC_080389.1:52978415-52978426in promoter 3305-3316 bp |
- | 685 bp upstream of target TSS | 99.3/ 100 | 1 | 52979111-52984837(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr05G000068 |
Chr05 | NC_080391.1:332118-332129in promoter 3125-3136 bp |
+ | 865 bp upstream of target TSS | 99.3/ 100 | 1 | 332994-334220(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G000785 |
Chr04 | NC_080390.1:9656717-9656728in promoter 2689-2700 bp |
- | 1301 bp upstream of target TSS | 99.3/ 100 | 1 | 9652815-9655416(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G004016 |
Chr04 | NC_080390.1:55435136-55435147in promoter 1176-1187 bp |
- | 2814 bp upstream of target TSS | 99.3/ 100 | 1 | 55430396-55432322(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr02G001288 |
Chr02 | NC_080388.1:23724752-23724763in promoter 665-676 bp |
- | 3325 bp upstream of target TSS | 99.3/ 100 | 1 | 23720890-23721427(-) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr04G003108 |
Chr04 | NC_080390.1:47636654-47636665in promoter 449-460 bp |
+ | 3541 bp upstream of target TSS | 99.3/ 100 | 1 | 47640206-47642840(+) |
SMil_00013647-RA_Salv |
MP00040 |
TGCTGACGTGGC |
SmilChr03G004382 |
Chr03 | NC_080389.1:62023194-62023205in promoter 308-319 bp |
- | 3682 bp upstream of target TSS | 99.3/ 100 | 1 | 62026887-62029727(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGCA |
SmilChr04G001484 |
Chr04 | NC_080390.1:24270270-24270281in promoter 3094-3105 bp |
- | 896 bp upstream of target TSS | 98.9/ 100 | 1 | 24271177-24288406(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTGAGCC |
SmilChr01G001147 |
Chr01 | NC_080387.1:23454851-23454862in promoter 1811-1822 bp |
+ | 2179 bp upstream of target TSS | 98.8/ 100 | 3 | 23437008-23452672(-) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGGG |
SmilChr02G001573 |
Chr02 | NC_080388.1:29164442-29164453in promoter 3888-3899 bp |
- | 102 bp upstream of target TSS | 98.8/ 100 | 1 | 29162480-29164340(-) |
SMil_00013647-RA_Salv |
MP00040 |
CCCTGACGTGGC |
SmilChr04G003689 |
Chr04 | NC_080390.1:53293825-53293836in promoter 3882-3893 bp |
- | 108 bp upstream of target TSS | 98.8/ 100 | 1 | 53288763-53293717(-) |
SMil_00013647-RA_Salv |
MP00040 |
CCCTGACGTGGC |
SmilChr03G002726 |
Chr03 | NC_080389.1:43309915-43309926in promoter 895-906 bp |
- | 3095 bp upstream of target TSS | 98.8/ 100 | 1 | 43313021-43320338(+) |
SMil_00013647-RA_Salv |
MP00040 |
GCCACGTCAGGG |