TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr05G000260; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00013647-RA_Salv SmilChr05G000260 bZIP XP_057763683.1 MP00040 TGCTGACGTGGC

Predicted Target Genes

9919 binding sites 6920 candidate target genes Page 2 / 139 Download TSV

Previous 2 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr03G004466 Chr03 NC_080389.1:62718944-62718955in promoter 3052-3063 bp + 938 bp upstream of target TSS 99.4/ 100 1 62719893-62722215(+) SMil_00013647-RA_Salv MP00040 CGCTGACGTGGG
SmilChr04G004164 Chr04 NC_080390.1:56307176-56307187in promoter 1961-1972 bp - 2029 bp upstream of target TSS 99.4/ 100 1 56304289-56305147(-) SMil_00013647-RA_Salv MP00040 CGCTGACGTGGG
SmilChr03G001529 Chr03 NC_080389.1:19080780-19080791in promoter 1656-1667 bp + 2334 bp upstream of target TSS 99.4/ 100 1 19077686-19078446(-) SMil_00013647-RA_Salv MP00040 CCCACGTCAGCC
SmilChr04G001291 Chr04 NC_080390.1:20571504-20571515in promoter 1352-1363 bp - 2638 bp upstream of target TSS 99.4/ 100 1 20574153-20576371(+) SMil_00013647-RA_Salv MP00040 CCCACGTCAGCC
SmilChr01G001012 Chr01 NC_080387.1:21293699-21293710in promoter 1802-1813 bp + 2188 bp upstream of target TSS 99.3/ 100 5 21288277-21291511(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr02G001193 Chr02 NC_080388.1:21957791-21957802in promoter 1619-1630 bp + 2371 bp upstream of target TSS 99.3/ 100 5 21960173-21963698(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr01G000317 Chr01 NC_080387.1:6166176-6166187in promoter 3598-3609 bp - 392 bp upstream of target TSS 99.3/ 100 4 6163128-6165784(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G001398 Chr04 NC_080390.1:22772736-22772747in promoter 3378-3389 bp + 612 bp upstream of target TSS 99.3/ 100 4 22773359-22773987(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr01G004345 Chr01 NC_080387.1:61609454-61609465in promoter 3350-3361 bp - 640 bp upstream of target TSS 99.3/ 100 4 61610105-61613153(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr02G004293 Chr02 NC_080388.1:65294841-65294852in promoter 2858-2869 bp + 1132 bp upstream of target TSS 99.3/ 100 4 65292844-65293709(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr01G004344 Chr01 NC_080387.1:61609049-61609060in promoter 2819-2830 bp - 1171 bp upstream of target TSS 99.3/ 100 4 61602473-61607878(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr01G000928 Chr01 NC_080387.1:19665467-19665478in promoter 2310-2321 bp - 1680 bp upstream of target TSS 99.3/ 100 4 19661589-19663787(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr02G000357 Chr02 NC_080388.1:4606521-4606532in promoter 572-583 bp + 3418 bp upstream of target TSS 99.3/ 100 4 4601080-4603103(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr04G001397 Chr04 NC_080390.1:22772736-22772747in promoter 185-196 bp + 3805 bp upstream of target TSS 99.3/ 100 4 22767711-22768931(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr02G000358 Chr02 NC_080388.1:4612051-4612062in promoter 170-181 bp + 3820 bp upstream of target TSS 99.3/ 100 4 4615882-4618242(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G001010 Chr04 NC_080390.1:14095758-14095769in promoter 3546-3557 bp + 444 bp upstream of target TSS 99.3/ 100 3 14096213-14099180(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G002686 Chr04 NC_080390.1:42292827-42292838in promoter 2260-2271 bp - 1730 bp upstream of target TSS 99.3/ 100 3 42294568-42297970(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr03G003906 Chr03 NC_080389.1:58155995-58156006in promoter 1794-1805 bp - 2196 bp upstream of target TSS 99.3/ 100 3 58158202-58162638(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr04G002685 Chr04 NC_080390.1:42292827-42292838in promoter 1546-1557 bp - 2444 bp upstream of target TSS 99.3/ 100 3 42288245-42290383(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr03G001651 Chr03 NC_080389.1:21453760-21453771in promoter 1256-1267 bp + 2734 bp upstream of target TSS 99.3/ 100 3 21449896-21451026(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr02G000720 Chr02 NC_080388.1:11589367-11589378in promoter 1231-1242 bp - 2759 bp upstream of target TSS 99.3/ 100 3 11592137-11595069(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr01G003581 Chr01 NC_080387.1:54378722-54378733in promoter 3940-3951 bp - 50 bp upstream of target TSS 99.3/ 100 2 54376761-54378672(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G001276 Chr04 NC_080390.1:20291354-20291365in promoter 3660-3671 bp - 330 bp upstream of target TSS 99.3/ 100 2 20291695-20292501(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr03G003343 Chr03 NC_080389.1:51766013-51766024in promoter 3403-3414 bp + 587 bp upstream of target TSS 99.3/ 100 2 51757803-51765426(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr04G001275 Chr04 NC_080390.1:20291354-20291365in promoter 2593-2604 bp - 1397 bp upstream of target TSS 99.3/ 100 2 20273678-20289957(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr02G003049 Chr02 NC_080388.1:51285814-51285825in promoter 2375-2386 bp - 1615 bp upstream of target TSS 99.3/ 100 2 51287440-51289156(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr04G001009 Chr04 NC_080390.1:14095758-14095769in promoter 2241-2252 bp + 1749 bp upstream of target TSS 99.3/ 100 2 14090632-14094009(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr02G002733 Chr02 NC_080388.1:47250652-47250663in promoter 2101-2112 bp + 1889 bp upstream of target TSS 99.3/ 100 2 47252552-47261659(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G002490 Chr04 NC_080390.1:39781214-39781225in promoter 1462-1473 bp - 2528 bp upstream of target TSS 99.3/ 100 2 39783753-39786583(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr04G003749 Chr04 NC_080390.1:53768869-53768880in promoter 1181-1192 bp + 2809 bp upstream of target TSS 99.3/ 100 2 53771689-53775979(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr03G002597 Chr03 NC_080389.1:41275613-41275624in promoter 583-594 bp + 3407 bp upstream of target TSS 99.3/ 100 2 41262782-41272206(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr03G000333 Chr03 NC_080389.1:3774045-3774056in promoter 545-556 bp + 3445 bp upstream of target TSS 99.3/ 100 2 3777501-3780755(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G000951 Chr04 NC_080390.1:12589940-12589951in promoter 3959-3970 bp - 31 bp upstream of target TSS 99.3/ 100 1 12588461-12589909(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G003903 Chr04 NC_080390.1:54801806-54801817in promoter 3946-3957 bp - 44 bp upstream of target TSS 99.3/ 100 1 54801861-54808607(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr01G005238 Chr01 NC_080387.1:69944012-69944023in promoter 3935-3946 bp - 55 bp upstream of target TSS 99.3/ 100 1 69941803-69943957(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr02G002730 Chr02 NC_080388.1:47214835-47214846in promoter 3928-3939 bp - 62 bp upstream of target TSS 99.3/ 100 1 47212111-47214773(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G004077 Chr04 NC_080390.1:55841959-55841970in promoter 3844-3855 bp + 146 bp upstream of target TSS 99.3/ 100 1 55842116-55846248(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr01G001487 Chr01 NC_080387.1:28658826-28658837in promoter 3352-3363 bp + 638 bp upstream of target TSS 99.3/ 100 1 28653686-28658188(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr03G003460 Chr03 NC_080389.1:52978415-52978426in promoter 3305-3316 bp - 685 bp upstream of target TSS 99.3/ 100 1 52979111-52984837(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr05G000068 Chr05 NC_080391.1:332118-332129in promoter 3125-3136 bp + 865 bp upstream of target TSS 99.3/ 100 1 332994-334220(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G000785 Chr04 NC_080390.1:9656717-9656728in promoter 2689-2700 bp - 1301 bp upstream of target TSS 99.3/ 100 1 9652815-9655416(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G004016 Chr04 NC_080390.1:55435136-55435147in promoter 1176-1187 bp - 2814 bp upstream of target TSS 99.3/ 100 1 55430396-55432322(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr02G001288 Chr02 NC_080388.1:23724752-23724763in promoter 665-676 bp - 3325 bp upstream of target TSS 99.3/ 100 1 23720890-23721427(-) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr04G003108 Chr04 NC_080390.1:47636654-47636665in promoter 449-460 bp + 3541 bp upstream of target TSS 99.3/ 100 1 47640206-47642840(+) SMil_00013647-RA_Salv MP00040 TGCTGACGTGGC
SmilChr03G004382 Chr03 NC_080389.1:62023194-62023205in promoter 308-319 bp - 3682 bp upstream of target TSS 99.3/ 100 1 62026887-62029727(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGCA
SmilChr04G001484 Chr04 NC_080390.1:24270270-24270281in promoter 3094-3105 bp - 896 bp upstream of target TSS 98.9/ 100 1 24271177-24288406(+) SMil_00013647-RA_Salv MP00040 GCCACGTGAGCC
SmilChr01G001147 Chr01 NC_080387.1:23454851-23454862in promoter 1811-1822 bp + 2179 bp upstream of target TSS 98.8/ 100 3 23437008-23452672(-) SMil_00013647-RA_Salv MP00040 GCCACGTCAGGG
SmilChr02G001573 Chr02 NC_080388.1:29164442-29164453in promoter 3888-3899 bp - 102 bp upstream of target TSS 98.8/ 100 1 29162480-29164340(-) SMil_00013647-RA_Salv MP00040 CCCTGACGTGGC
SmilChr04G003689 Chr04 NC_080390.1:53293825-53293836in promoter 3882-3893 bp - 108 bp upstream of target TSS 98.8/ 100 1 53288763-53293717(-) SMil_00013647-RA_Salv MP00040 CCCTGACGTGGC
SmilChr03G002726 Chr03 NC_080389.1:43309915-43309926in promoter 895-906 bp - 3095 bp upstream of target TSS 98.8/ 100 1 43313021-43320338(+) SMil_00013647-RA_Salv MP00040 GCCACGTCAGGG