TF Target Search

Enter a Red Sage TF ID, standard Gene ID, LOC/GeneID, protein ID, motif ID, or TF family to query precomputed genome-wide promoter binding sites and target genes.
257motifs
38157precomputed promoters
1892224precomputed TF sites
257indexed TF/motifs

Candidate-target Evidence Boundary

Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.

Available Transcription Factors

The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.

Examples
100 / 257 TF entries Threshold 0.90 1892224 precomputed sites
TF ID Family Motifs Target genes Sites Actions
C2H2 1
MP00592
8519 9901 Search targets
C2H2 1
MP00592
8519 9901 Search targets
ARR-B 1
MP00010
8344 9778 Search targets
NAC 1
MP00059
8333 9940 Search targets
MYB 1
MP00296
8304 9873 Search targets
MYB 1
MP00114
8151 9897 Search targets
WRKY 1
MP00408
8149 9902 Search targets
Nin-like 1
MP00449
8096 9453 Search targets
WRKY 1
MP00209
8083 9910 Search targets
MYB 1
MP00627
8075 9835 Search targets
WRKY 1
MP00450
8044 9901 Search targets
ERF 1
MP00558
8044 9762 Search targets
MIKC_MADS 1
MP00096
8019 9914 Search targets
MYB 1
MP00476
7981 9904 Search targets
NAC 1
MP00221
7965 9903 Search targets
WRKY 1
MP00069
7882 9917 Search targets
MYB 1
MP00406
7839 9917 Search targets
TALE 1
MP00670
7758 9906 Search targets
SBP 1
MP00555
7648 9805 Search targets
ARF 1
MP00021
7629 9812 Search targets
MYB 1
MP00132
7583 9926 Search targets
MIKC_MADS 1
MP00609
7575 9941 Search targets
ERF 1
MP00529
7559 9247 Search targets
MYB 1
MP00510
7526 9799 Search targets
NAC 1
MP00058
7440 9855 Search targets
bZIP 1
MP00303
7416 9868 Search targets
MYB_related 1
MP00565
7412 9785 Search targets
ERF 1
MP00026
7408 9854 Search targets
WRKY 1
MP00071
7408 9764 Search targets
ARF 1
MP00033
7406 9827 Search targets
bHLH 1
MP00074
7396 9969 Search targets
MYB 1
MP00216
7342 9832 Search targets
WRKY 1
MP00539
7338 9848 Search targets
ARF 1
MP00574
7302 9846 Search targets
WRKY 1
MP00464
7299 9864 Search targets
MIKC_MADS 1
MP00315
7291 9567 Search targets
WRKY 1
MP00525
7235 9838 Search targets
WRKY 1
MP00171
7182 9833 Search targets
WRKY 1
MP00506
7173 9818 Search targets
MIKC_MADS 1
MP00272
7172 9889 Search targets
bZIP 1
MP00184
7147 9840 Search targets
bZIP 1
MP00647
7133 9953 Search targets
C2H2 1
MP00485
7130 8059 Search targets
MYB 1
MP00134
7078 8676 Search targets
ERF 1
MP00312
7006 8490 Search targets
MYB 1
MP00564
6984 9893 Search targets
G2-like 1
MP00022
6959 9720 Search targets
bZIP 1
MP00040
6920 9919 Search targets
ERF 1
MP00151
6907 9976 Search targets
WRKY 1
MP00455
6900 9792 Search targets
MYB 1
MP00482
6899 8940 Search targets
bZIP 1
MP00291
6894 9321 Search targets
SBP 1
MP00307
6893 9755 Search targets
bHLH 1
MP00195
6878 9832 Search targets
MYB 1
MP00388
6870 9774 Search targets
bZIP 1
MP00318
6849 9413 Search targets
SBP 1
MP00633
6833 8026 Search targets
bHLH 1
MP00308
6805 9826 Search targets
bHLH 1
MP00082
6784 9435 Search targets
MIKC_MADS 1
MP00080
6766 9850 Search targets
MYB 1
MP00028
6764 9024 Search targets
MYB 1
MP00191
6736 9690 Search targets
bHLH 1
MP00081
6729 9942 Search targets
MYB 1
MP00500
6697 9681 Search targets
ERF 1
MP00452
6671 7783 Search targets
WRKY 1
MP00531
6663 9784 Search targets
HD-ZIP 1
MP00200
6661 9930 Search targets
bHLH 1
MP00034
6653 9929 Search targets
bHLH 1
MP00660
6653 9929 Search targets
MYB 1
MP00055
6638 9685 Search targets
SBP 1
MP00634
6619 7771 Search targets
bHLH 1
MP00035
6618 9903 Search targets
MYB_related 1
MP00568
6611 9696 Search targets
bZIP 1
MP00039
6610 9936 Search targets
WRKY 1
MP00284
6552 9774 Search targets
WRKY 1
MP00422
6535 9791 Search targets
ARF 1
MP00153
6534 9706 Search targets
YABBY 1
MP00620
6504 9844 Search targets
TCP 1
MP00169
6498 7295 Search targets
G2-like 1
MP00252
6478 9780 Search targets
NAC 1
MP00108
6458 9810 Search targets
TCP 1
MP00062
6454 7249 Search targets
RAV 1
MP00024
6450 9853 Search targets
WRKY 1
MP00167
6439 9756 Search targets
C2H2 1
MP00416
6433 9716 Search targets
C2H2 1
MP00608
6398 9817 Search targets
ERF 1
MP00240
6368 9978 Search targets
MYB_related 1
MP00607
6362 9718 Search targets
Dof 1
MP00402
6278 9875 Search targets
bZIP 1
MP00409
6252 8429 Search targets
GRAS 1
MP00611
6232 9807 Search targets
bZIP 1
MP00648
6170 9939 Search targets
ERF 1
MP00120
6144 7514 Search targets
WRKY 1
MP00251
6140 9713 Search targets
MIKC_MADS 1
MP00077
6125 9815 Search targets
GATA 1
MP00130
6015 9821 Search targets
MIKC_MADS 1
MP00508
5979 7481 Search targets
WRKY 1
MP00260
5932 9706 Search targets
HD-ZIP 1
MP00013
5927 9712 Search targets
WRKY 1
MP00299
5919 9699 Search targets

Matched TF / motifs

Input: SmilChr02G002534; matched 1 motifs; threshold: 0.90

TF IDNew Gene IDFamilyProteinMotifConsensus
SMil_00003982-RA_Salv SmilChr02G002534 TCP XP_057797741.1 MP00169 GTTGGGACCACA

Predicted Target Genes

7295 binding sites 6498 candidate target genes Page 2 / 130 Download TSV

Previous 2 Next Up to 50 target genes per page
Target gene Chr Best binding site Site strand Upstream of target TSS Binding score Promoter hits Gene interval TF Motif Matched sequence
SmilChr01G001504 Chr01 NC_080387.1:28880902-28880913in promoter 2706-2717 bp + 1284 bp upstream of target TSS 100.0/ 100 1 28876833-28879618(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr07G000200 Chr07 NC_080393.1:1257549-1257560in promoter 2695-2706 bp + 1295 bp upstream of target TSS 100.0/ 100 1 1253932-1256254(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G004801 Chr01 NC_080387.1:66227637-66227648in promoter 2688-2699 bp - 1302 bp upstream of target TSS 100.0/ 100 1 66228950-66232834(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr07G000194 Chr07 NC_080393.1:1257549-1257560in promoter 2671-2682 bp + 1319 bp upstream of target TSS 100.0/ 100 1 1225502-1256230(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G002573 Chr01 NC_080387.1:43816576-43816587in promoter 2655-2666 bp + 1335 bp upstream of target TSS 100.0/ 100 1 43817922-43818628(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G000733 Chr01 NC_080387.1:16294121-16294132in promoter 2621-2632 bp + 1369 bp upstream of target TSS 100.0/ 100 1 16289859-16292752(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G004917 Chr01 NC_080387.1:67260049-67260060in promoter 2613-2624 bp - 1377 bp upstream of target TSS 100.0/ 100 1 67256752-67258672(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr05G003266 Chr05 NC_080391.1:42299233-42299244in promoter 2554-2565 bp - 1436 bp upstream of target TSS 100.0/ 100 1 42300680-42303210(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr02G003728 Chr02 NC_080388.1:58915799-58915810in promoter 2518-2529 bp - 1472 bp upstream of target TSS 100.0/ 100 1 58906516-58914327(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G001505 Chr01 NC_080387.1:28880902-28880913in promoter 2494-2505 bp + 1496 bp upstream of target TSS 100.0/ 100 1 28882409-28888793(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr07G002706 Chr07 NC_080393.1:26435920-26435931in promoter 2482-2493 bp - 1508 bp upstream of target TSS 100.0/ 100 1 26432701-26434412(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr07G000643 Chr07 NC_080393.1:4328286-4328297in promoter 2459-2470 bp - 1531 bp upstream of target TSS 100.0/ 100 1 4324394-4326755(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr07G001407 Chr07 NC_080393.1:10942611-10942622in promoter 2456-2467 bp + 1534 bp upstream of target TSS 100.0/ 100 1 10944156-10949833(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr08G002815 Chr08 NC_080394.1:27987781-27987792in promoter 2456-2467 bp - 1534 bp upstream of target TSS 100.0/ 100 1 27989326-27990732(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr03G000045 Chr03 NC_080389.1:498699-498710in promoter 2423-2434 bp + 1567 bp upstream of target TSS 100.0/ 100 1 493017-497132(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G001064 Chr01 NC_080387.1:21996074-21996085in promoter 2399-2410 bp + 1591 bp upstream of target TSS 100.0/ 100 1 21997676-21998775(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr03G000650 Chr03 NC_080389.1:7240064-7240075in promoter 2270-2281 bp + 1720 bp upstream of target TSS 100.0/ 100 1 7237817-7238344(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr07G000885 Chr07 NC_080393.1:6343261-6343272in promoter 2207-2218 bp + 1783 bp upstream of target TSS 100.0/ 100 1 6345055-6348080(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr05G000371 Chr05 NC_080391.1:2755226-2755237in promoter 2116-2127 bp + 1874 bp upstream of target TSS 100.0/ 100 1 2757111-2759387(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr07G000205 Chr07 NC_080393.1:1295488-1295499in promoter 1999-2010 bp + 1991 bp upstream of target TSS 100.0/ 100 1 1290993-1293497(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G002879 Chr01 NC_080387.1:47398193-47398204in promoter 1993-2004 bp - 1997 bp upstream of target TSS 100.0/ 100 1 47394962-47396196(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr02G004638 Chr02 NC_080388.1:68829079-68829090in promoter 1984-1995 bp - 2006 bp upstream of target TSS 100.0/ 100 1 68831096-68836022(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G004773 Chr01 NC_080387.1:65920925-65920936in promoter 1972-1983 bp + 2018 bp upstream of target TSS 100.0/ 100 1 65922954-65924552(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G002169 Chr01 NC_080387.1:37795525-37795536in promoter 1776-1787 bp + 2214 bp upstream of target TSS 100.0/ 100 1 37793240-37793311(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr05G004013 Chr05 NC_080391.1:54077776-54077787in promoter 1773-1784 bp - 2217 bp upstream of target TSS 100.0/ 100 1 54071851-54075559(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr06G001370 Chr06 NC_080392.1:14371620-14371631in promoter 1689-1700 bp + 2301 bp upstream of target TSS 100.0/ 100 1 14366642-14369319(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr05G003719 Chr05 NC_080391.1:50318529-50318540in promoter 1676-1687 bp + 2314 bp upstream of target TSS 100.0/ 100 1 50312178-50316215(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr05G004136 Chr05 NC_080391.1:55348168-55348179in promoter 1652-1663 bp - 2338 bp upstream of target TSS 100.0/ 100 1 55350517-55351365(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr03G003076 Chr03 NC_080389.1:47784643-47784654in promoter 1631-1642 bp + 2359 bp upstream of target TSS 100.0/ 100 1 47781488-47782284(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr07G000234 Chr07 NC_080393.1:1523602-1523613in promoter 1571-1582 bp + 2419 bp upstream of target TSS 100.0/ 100 1 1512203-1521183(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr03G004330 Chr03 NC_080389.1:61655989-61656000in promoter 1530-1541 bp + 2460 bp upstream of target TSS 100.0/ 100 1 61645624-61653529(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr04G004084 Chr04 NC_080390.1:55888181-55888192in promoter 1530-1541 bp + 2460 bp upstream of target TSS 100.0/ 100 1 55880427-55885721(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G001549 Chr01 NC_080387.1:29479350-29479361in promoter 1524-1535 bp - 2466 bp upstream of target TSS 100.0/ 100 1 29472855-29476884(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr04G003696 Chr04 NC_080390.1:53329749-53329760in promoter 1509-1520 bp + 2481 bp upstream of target TSS 100.0/ 100 1 53332241-53333104(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr07G003629 Chr07 NC_080393.1:42840487-42840498in promoter 1503-1514 bp + 2487 bp upstream of target TSS 100.0/ 100 1 42842985-42844942(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G000805 Chr01 NC_080387.1:17422240-17422251in promoter 1499-1510 bp + 2491 bp upstream of target TSS 100.0/ 100 1 17424742-17427727(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G002103 Chr01 NC_080387.1:37058856-37058867in promoter 1433-1444 bp + 2557 bp upstream of target TSS 100.0/ 100 1 37061424-37062479(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G000628 Chr01 NC_080387.1:14049704-14049715in promoter 1432-1443 bp - 2558 bp upstream of target TSS 100.0/ 100 1 14052273-14053478(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr07G003273 Chr07 NC_080393.1:34503109-34503120in promoter 1420-1431 bp + 2570 bp upstream of target TSS 100.0/ 100 1 34496729-34500539(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr08G003823 Chr08 NC_080394.1:44418551-44418562in promoter 1192-1203 bp + 2798 bp upstream of target TSS 100.0/ 100 1 44415499-44415753(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr01G006194 Chr01 NC_080387.1:77548290-77548301in promoter 1159-1170 bp - 2831 bp upstream of target TSS 100.0/ 100 1 77544050-77545459(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr04G002198 Chr04 NC_080390.1:35601034-35601045in promoter 1146-1157 bp + 2844 bp upstream of target TSS 100.0/ 100 1 35597271-35598190(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr08G003825 Chr08 NC_080394.1:44418551-44418562in promoter 1097-1108 bp + 2893 bp upstream of target TSS 100.0/ 100 1 44421455-44422148(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr02G002941 Chr02 NC_080388.1:49909301-49909312in promoter 1087-1098 bp - 2903 bp upstream of target TSS 100.0/ 100 1 49912215-49914291(+) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr03G003450 Chr03 NC_080389.1:52868108-52868119in promoter 1036-1047 bp + 2954 bp upstream of target TSS 100.0/ 100 1 52861403-52865154(-) SMil_00003982-RA_Salv MP00169 GGTGGTCCCCAC
SmilChr04G002091 Chr04 NC_080390.1:33741468-33741479in promoter 988-999 bp - 3002 bp upstream of target TSS 100.0/ 100 1 33735205-33738466(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr02G004883 Chr02 NC_080388.1:70918710-70918721in promoter 959-970 bp + 3031 bp upstream of target TSS 100.0/ 100 1 70921752-70925604(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr06G002734 Chr06 NC_080392.1:39567439-39567450in promoter 911-922 bp - 3079 bp upstream of target TSS 100.0/ 100 1 39562681-39564360(-) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr05G001698 Chr05 NC_080391.1:16190945-16190956in promoter 886-897 bp + 3104 bp upstream of target TSS 100.0/ 100 1 16194060-16196659(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC
SmilChr01G000160 Chr01 NC_080387.1:2690239-2690250in promoter 826-837 bp + 3164 bp upstream of target TSS 100.0/ 100 1 2693414-2698173(+) SMil_00003982-RA_Salv MP00169 GTGGGGACCACC