Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr02G002534; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00003982-RA_Salv |
SmilChr02G002534 |
TCP | XP_057797741.1 |
MP00169 |
GTTGGGACCACA |
7295 binding sites 6498 candidate target genes Page 2 / 130 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr01G001504 |
Chr01 | NC_080387.1:28880902-28880913in promoter 2706-2717 bp |
+ | 1284 bp upstream of target TSS | 100.0/ 100 | 1 | 28876833-28879618(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr07G000200 |
Chr07 | NC_080393.1:1257549-1257560in promoter 2695-2706 bp |
+ | 1295 bp upstream of target TSS | 100.0/ 100 | 1 | 1253932-1256254(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G004801 |
Chr01 | NC_080387.1:66227637-66227648in promoter 2688-2699 bp |
- | 1302 bp upstream of target TSS | 100.0/ 100 | 1 | 66228950-66232834(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr07G000194 |
Chr07 | NC_080393.1:1257549-1257560in promoter 2671-2682 bp |
+ | 1319 bp upstream of target TSS | 100.0/ 100 | 1 | 1225502-1256230(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G002573 |
Chr01 | NC_080387.1:43816576-43816587in promoter 2655-2666 bp |
+ | 1335 bp upstream of target TSS | 100.0/ 100 | 1 | 43817922-43818628(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G000733 |
Chr01 | NC_080387.1:16294121-16294132in promoter 2621-2632 bp |
+ | 1369 bp upstream of target TSS | 100.0/ 100 | 1 | 16289859-16292752(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G004917 |
Chr01 | NC_080387.1:67260049-67260060in promoter 2613-2624 bp |
- | 1377 bp upstream of target TSS | 100.0/ 100 | 1 | 67256752-67258672(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr05G003266 |
Chr05 | NC_080391.1:42299233-42299244in promoter 2554-2565 bp |
- | 1436 bp upstream of target TSS | 100.0/ 100 | 1 | 42300680-42303210(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr02G003728 |
Chr02 | NC_080388.1:58915799-58915810in promoter 2518-2529 bp |
- | 1472 bp upstream of target TSS | 100.0/ 100 | 1 | 58906516-58914327(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G001505 |
Chr01 | NC_080387.1:28880902-28880913in promoter 2494-2505 bp |
+ | 1496 bp upstream of target TSS | 100.0/ 100 | 1 | 28882409-28888793(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr07G002706 |
Chr07 | NC_080393.1:26435920-26435931in promoter 2482-2493 bp |
- | 1508 bp upstream of target TSS | 100.0/ 100 | 1 | 26432701-26434412(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr07G000643 |
Chr07 | NC_080393.1:4328286-4328297in promoter 2459-2470 bp |
- | 1531 bp upstream of target TSS | 100.0/ 100 | 1 | 4324394-4326755(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr07G001407 |
Chr07 | NC_080393.1:10942611-10942622in promoter 2456-2467 bp |
+ | 1534 bp upstream of target TSS | 100.0/ 100 | 1 | 10944156-10949833(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr08G002815 |
Chr08 | NC_080394.1:27987781-27987792in promoter 2456-2467 bp |
- | 1534 bp upstream of target TSS | 100.0/ 100 | 1 | 27989326-27990732(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr03G000045 |
Chr03 | NC_080389.1:498699-498710in promoter 2423-2434 bp |
+ | 1567 bp upstream of target TSS | 100.0/ 100 | 1 | 493017-497132(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G001064 |
Chr01 | NC_080387.1:21996074-21996085in promoter 2399-2410 bp |
+ | 1591 bp upstream of target TSS | 100.0/ 100 | 1 | 21997676-21998775(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr03G000650 |
Chr03 | NC_080389.1:7240064-7240075in promoter 2270-2281 bp |
+ | 1720 bp upstream of target TSS | 100.0/ 100 | 1 | 7237817-7238344(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr07G000885 |
Chr07 | NC_080393.1:6343261-6343272in promoter 2207-2218 bp |
+ | 1783 bp upstream of target TSS | 100.0/ 100 | 1 | 6345055-6348080(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr05G000371 |
Chr05 | NC_080391.1:2755226-2755237in promoter 2116-2127 bp |
+ | 1874 bp upstream of target TSS | 100.0/ 100 | 1 | 2757111-2759387(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr07G000205 |
Chr07 | NC_080393.1:1295488-1295499in promoter 1999-2010 bp |
+ | 1991 bp upstream of target TSS | 100.0/ 100 | 1 | 1290993-1293497(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G002879 |
Chr01 | NC_080387.1:47398193-47398204in promoter 1993-2004 bp |
- | 1997 bp upstream of target TSS | 100.0/ 100 | 1 | 47394962-47396196(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr02G004638 |
Chr02 | NC_080388.1:68829079-68829090in promoter 1984-1995 bp |
- | 2006 bp upstream of target TSS | 100.0/ 100 | 1 | 68831096-68836022(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G004773 |
Chr01 | NC_080387.1:65920925-65920936in promoter 1972-1983 bp |
+ | 2018 bp upstream of target TSS | 100.0/ 100 | 1 | 65922954-65924552(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G002169 |
Chr01 | NC_080387.1:37795525-37795536in promoter 1776-1787 bp |
+ | 2214 bp upstream of target TSS | 100.0/ 100 | 1 | 37793240-37793311(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr05G004013 |
Chr05 | NC_080391.1:54077776-54077787in promoter 1773-1784 bp |
- | 2217 bp upstream of target TSS | 100.0/ 100 | 1 | 54071851-54075559(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr06G001370 |
Chr06 | NC_080392.1:14371620-14371631in promoter 1689-1700 bp |
+ | 2301 bp upstream of target TSS | 100.0/ 100 | 1 | 14366642-14369319(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr05G003719 |
Chr05 | NC_080391.1:50318529-50318540in promoter 1676-1687 bp |
+ | 2314 bp upstream of target TSS | 100.0/ 100 | 1 | 50312178-50316215(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr05G004136 |
Chr05 | NC_080391.1:55348168-55348179in promoter 1652-1663 bp |
- | 2338 bp upstream of target TSS | 100.0/ 100 | 1 | 55350517-55351365(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr03G003076 |
Chr03 | NC_080389.1:47784643-47784654in promoter 1631-1642 bp |
+ | 2359 bp upstream of target TSS | 100.0/ 100 | 1 | 47781488-47782284(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr07G000234 |
Chr07 | NC_080393.1:1523602-1523613in promoter 1571-1582 bp |
+ | 2419 bp upstream of target TSS | 100.0/ 100 | 1 | 1512203-1521183(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr03G004330 |
Chr03 | NC_080389.1:61655989-61656000in promoter 1530-1541 bp |
+ | 2460 bp upstream of target TSS | 100.0/ 100 | 1 | 61645624-61653529(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr04G004084 |
Chr04 | NC_080390.1:55888181-55888192in promoter 1530-1541 bp |
+ | 2460 bp upstream of target TSS | 100.0/ 100 | 1 | 55880427-55885721(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G001549 |
Chr01 | NC_080387.1:29479350-29479361in promoter 1524-1535 bp |
- | 2466 bp upstream of target TSS | 100.0/ 100 | 1 | 29472855-29476884(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr04G003696 |
Chr04 | NC_080390.1:53329749-53329760in promoter 1509-1520 bp |
+ | 2481 bp upstream of target TSS | 100.0/ 100 | 1 | 53332241-53333104(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr07G003629 |
Chr07 | NC_080393.1:42840487-42840498in promoter 1503-1514 bp |
+ | 2487 bp upstream of target TSS | 100.0/ 100 | 1 | 42842985-42844942(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G000805 |
Chr01 | NC_080387.1:17422240-17422251in promoter 1499-1510 bp |
+ | 2491 bp upstream of target TSS | 100.0/ 100 | 1 | 17424742-17427727(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G002103 |
Chr01 | NC_080387.1:37058856-37058867in promoter 1433-1444 bp |
+ | 2557 bp upstream of target TSS | 100.0/ 100 | 1 | 37061424-37062479(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G000628 |
Chr01 | NC_080387.1:14049704-14049715in promoter 1432-1443 bp |
- | 2558 bp upstream of target TSS | 100.0/ 100 | 1 | 14052273-14053478(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr07G003273 |
Chr07 | NC_080393.1:34503109-34503120in promoter 1420-1431 bp |
+ | 2570 bp upstream of target TSS | 100.0/ 100 | 1 | 34496729-34500539(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr08G003823 |
Chr08 | NC_080394.1:44418551-44418562in promoter 1192-1203 bp |
+ | 2798 bp upstream of target TSS | 100.0/ 100 | 1 | 44415499-44415753(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr01G006194 |
Chr01 | NC_080387.1:77548290-77548301in promoter 1159-1170 bp |
- | 2831 bp upstream of target TSS | 100.0/ 100 | 1 | 77544050-77545459(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr04G002198 |
Chr04 | NC_080390.1:35601034-35601045in promoter 1146-1157 bp |
+ | 2844 bp upstream of target TSS | 100.0/ 100 | 1 | 35597271-35598190(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr08G003825 |
Chr08 | NC_080394.1:44418551-44418562in promoter 1097-1108 bp |
+ | 2893 bp upstream of target TSS | 100.0/ 100 | 1 | 44421455-44422148(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr02G002941 |
Chr02 | NC_080388.1:49909301-49909312in promoter 1087-1098 bp |
- | 2903 bp upstream of target TSS | 100.0/ 100 | 1 | 49912215-49914291(+) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr03G003450 |
Chr03 | NC_080389.1:52868108-52868119in promoter 1036-1047 bp |
+ | 2954 bp upstream of target TSS | 100.0/ 100 | 1 | 52861403-52865154(-) |
SMil_00003982-RA_Salv |
MP00169 |
GGTGGTCCCCAC |
SmilChr04G002091 |
Chr04 | NC_080390.1:33741468-33741479in promoter 988-999 bp |
- | 3002 bp upstream of target TSS | 100.0/ 100 | 1 | 33735205-33738466(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr02G004883 |
Chr02 | NC_080388.1:70918710-70918721in promoter 959-970 bp |
+ | 3031 bp upstream of target TSS | 100.0/ 100 | 1 | 70921752-70925604(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr06G002734 |
Chr06 | NC_080392.1:39567439-39567450in promoter 911-922 bp |
- | 3079 bp upstream of target TSS | 100.0/ 100 | 1 | 39562681-39564360(-) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr05G001698 |
Chr05 | NC_080391.1:16190945-16190956in promoter 886-897 bp |
+ | 3104 bp upstream of target TSS | 100.0/ 100 | 1 | 16194060-16196659(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |
SmilChr01G000160 |
Chr01 | NC_080387.1:2690239-2690250in promoter 826-837 bp |
+ | 3164 bp upstream of target TSS | 100.0/ 100 | 1 | 2693414-2698173(+) |
SMil_00003982-RA_Salv |
MP00169 |
GTGGGGACCACC |