Target lists come from precomputed motif hits in 4 kb promoters and the current TF-to-motif relationships. They are motif-supported candidate targets, not verified direct regulatory relationships in Red Sage. Different TFs can share similar motifs; expression, genetic, and binding experiments are required for confirmation.
The table is built from the current Red Sage TF motif and precomputed target index. Search by TF family, standard Gene ID, legacy ID, NCBI/GeneID, Protein ID, or motif ID. Click any gene/protein ID to open the Gene Card, or use Search targets to open the target-gene result page.
| TF ID | Family | Motifs | Target genes | Sites | Actions |
|---|---|---|---|---|---|
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| C2H2 | 1MP00592 |
8519 | 9901 | Search targets | |
| ARR-B | 1MP00010 |
8344 | 9778 | Search targets | |
| NAC | 1MP00059 |
8333 | 9940 | Search targets | |
| MYB | 1MP00296 |
8304 | 9873 | Search targets | |
| MYB | 1MP00114 |
8151 | 9897 | Search targets | |
| WRKY | 1MP00408 |
8149 | 9902 | Search targets | |
| Nin-like | 1MP00449 |
8096 | 9453 | Search targets | |
| WRKY | 1MP00209 |
8083 | 9910 | Search targets | |
| MYB | 1MP00627 |
8075 | 9835 | Search targets | |
| WRKY | 1MP00450 |
8044 | 9901 | Search targets | |
| ERF | 1MP00558 |
8044 | 9762 | Search targets | |
| MIKC_MADS | 1MP00096 |
8019 | 9914 | Search targets | |
| MYB | 1MP00476 |
7981 | 9904 | Search targets | |
| NAC | 1MP00221 |
7965 | 9903 | Search targets | |
| WRKY | 1MP00069 |
7882 | 9917 | Search targets | |
| MYB | 1MP00406 |
7839 | 9917 | Search targets | |
| TALE | 1MP00670 |
7758 | 9906 | Search targets | |
| SBP | 1MP00555 |
7648 | 9805 | Search targets | |
| ARF | 1MP00021 |
7629 | 9812 | Search targets | |
| MYB | 1MP00132 |
7583 | 9926 | Search targets | |
| MIKC_MADS | 1MP00609 |
7575 | 9941 | Search targets | |
| ERF | 1MP00529 |
7559 | 9247 | Search targets | |
| MYB | 1MP00510 |
7526 | 9799 | Search targets | |
| NAC | 1MP00058 |
7440 | 9855 | Search targets | |
| bZIP | 1MP00303 |
7416 | 9868 | Search targets | |
| MYB_related | 1MP00565 |
7412 | 9785 | Search targets | |
| ERF | 1MP00026 |
7408 | 9854 | Search targets | |
| WRKY | 1MP00071 |
7408 | 9764 | Search targets | |
| ARF | 1MP00033 |
7406 | 9827 | Search targets | |
| bHLH | 1MP00074 |
7396 | 9969 | Search targets | |
| MYB | 1MP00216 |
7342 | 9832 | Search targets | |
| WRKY | 1MP00539 |
7338 | 9848 | Search targets | |
| ARF | 1MP00574 |
7302 | 9846 | Search targets | |
| WRKY | 1MP00464 |
7299 | 9864 | Search targets | |
| MIKC_MADS | 1MP00315 |
7291 | 9567 | Search targets | |
| WRKY | 1MP00525 |
7235 | 9838 | Search targets | |
| WRKY | 1MP00171 |
7182 | 9833 | Search targets | |
| WRKY | 1MP00506 |
7173 | 9818 | Search targets | |
| MIKC_MADS | 1MP00272 |
7172 | 9889 | Search targets | |
| bZIP | 1MP00184 |
7147 | 9840 | Search targets | |
| bZIP | 1MP00647 |
7133 | 9953 | Search targets | |
| C2H2 | 1MP00485 |
7130 | 8059 | Search targets | |
| MYB | 1MP00134 |
7078 | 8676 | Search targets | |
| ERF | 1MP00312 |
7006 | 8490 | Search targets | |
| MYB | 1MP00564 |
6984 | 9893 | Search targets | |
| G2-like | 1MP00022 |
6959 | 9720 | Search targets | |
| bZIP | 1MP00040 |
6920 | 9919 | Search targets | |
| ERF | 1MP00151 |
6907 | 9976 | Search targets | |
| WRKY | 1MP00455 |
6900 | 9792 | Search targets | |
| MYB | 1MP00482 |
6899 | 8940 | Search targets | |
| bZIP | 1MP00291 |
6894 | 9321 | Search targets | |
| SBP | 1MP00307 |
6893 | 9755 | Search targets | |
| bHLH | 1MP00195 |
6878 | 9832 | Search targets | |
| MYB | 1MP00388 |
6870 | 9774 | Search targets | |
| bZIP | 1MP00318 |
6849 | 9413 | Search targets | |
| SBP | 1MP00633 |
6833 | 8026 | Search targets | |
| bHLH | 1MP00308 |
6805 | 9826 | Search targets | |
| bHLH | 1MP00082 |
6784 | 9435 | Search targets | |
| MIKC_MADS | 1MP00080 |
6766 | 9850 | Search targets | |
| MYB | 1MP00028 |
6764 | 9024 | Search targets | |
| MYB | 1MP00191 |
6736 | 9690 | Search targets | |
| bHLH | 1MP00081 |
6729 | 9942 | Search targets | |
| MYB | 1MP00500 |
6697 | 9681 | Search targets | |
| ERF | 1MP00452 |
6671 | 7783 | Search targets | |
| WRKY | 1MP00531 |
6663 | 9784 | Search targets | |
| HD-ZIP | 1MP00200 |
6661 | 9930 | Search targets | |
| bHLH | 1MP00034 |
6653 | 9929 | Search targets | |
| bHLH | 1MP00660 |
6653 | 9929 | Search targets | |
| MYB | 1MP00055 |
6638 | 9685 | Search targets | |
| SBP | 1MP00634 |
6619 | 7771 | Search targets | |
| bHLH | 1MP00035 |
6618 | 9903 | Search targets | |
| MYB_related | 1MP00568 |
6611 | 9696 | Search targets | |
| bZIP | 1MP00039 |
6610 | 9936 | Search targets | |
| WRKY | 1MP00284 |
6552 | 9774 | Search targets | |
| WRKY | 1MP00422 |
6535 | 9791 | Search targets | |
| ARF | 1MP00153 |
6534 | 9706 | Search targets | |
| YABBY | 1MP00620 |
6504 | 9844 | Search targets | |
| TCP | 1MP00169 |
6498 | 7295 | Search targets | |
| G2-like | 1MP00252 |
6478 | 9780 | Search targets | |
| NAC | 1MP00108 |
6458 | 9810 | Search targets | |
| TCP | 1MP00062 |
6454 | 7249 | Search targets | |
| RAV | 1MP00024 |
6450 | 9853 | Search targets | |
| WRKY | 1MP00167 |
6439 | 9756 | Search targets | |
| C2H2 | 1MP00416 |
6433 | 9716 | Search targets | |
| C2H2 | 1MP00608 |
6398 | 9817 | Search targets | |
| ERF | 1MP00240 |
6368 | 9978 | Search targets | |
| MYB_related | 1MP00607 |
6362 | 9718 | Search targets | |
| Dof | 1MP00402 |
6278 | 9875 | Search targets | |
| bZIP | 1MP00409 |
6252 | 8429 | Search targets | |
| GRAS | 1MP00611 |
6232 | 9807 | Search targets | |
| bZIP | 1MP00648 |
6170 | 9939 | Search targets | |
| ERF | 1MP00120 |
6144 | 7514 | Search targets | |
| WRKY | 1MP00251 |
6140 | 9713 | Search targets | |
| MIKC_MADS | 1MP00077 |
6125 | 9815 | Search targets | |
| GATA | 1MP00130 |
6015 | 9821 | Search targets | |
| MIKC_MADS | 1MP00508 |
5979 | 7481 | Search targets | |
| WRKY | 1MP00260 |
5932 | 9706 | Search targets | |
| HD-ZIP | 1MP00013 |
5927 | 9712 | Search targets | |
| WRKY | 1MP00299 |
5919 | 9699 | Search targets |
Input: SmilChr04G002953; matched 1 motifs; threshold: 0.90
| TF ID | New Gene ID | Family | Protein | Motif | Consensus |
|---|---|---|---|---|---|
SMil_00011004-RA_Salv |
SmilChr04G002953 |
ARF | XP_057809314.1 |
MP00033 |
TTTGTCGGC |
9827 binding sites 7406 candidate target genes Page 2 / 149 Download TSV
| Target gene | Chr | Best binding site | Site strand | Upstream of target TSS | Binding score | Promoter hits | Gene interval | TF | Motif | Matched sequence |
|---|---|---|---|---|---|---|---|---|---|---|
SmilChr02G001947 |
Chr02 | NC_080388.1:35090333-35090341in promoter 2342-2350 bp |
- | 1651 bp upstream of target TSS | 100.0/ 100 | 1 | 35086837-35088682(-) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr01G002464 |
Chr01 | NC_080387.1:42340518-42340526in promoter 2215-2223 bp |
+ | 1778 bp upstream of target TSS | 100.0/ 100 | 1 | 42337723-42338740(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr01G000144 |
Chr01 | NC_080387.1:2434732-2434740in promoter 2202-2210 bp |
- | 1791 bp upstream of target TSS | 100.0/ 100 | 1 | 2432032-2432941(-) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr01G001372 |
Chr01 | NC_080387.1:27055789-27055797in promoter 2057-2065 bp |
- | 1936 bp upstream of target TSS | 100.0/ 100 | 1 | 27057733-27059408(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr04G002579 |
Chr04 | NC_080390.1:41155437-41155445in promoter 1993-2001 bp |
- | 2000 bp upstream of target TSS | 100.0/ 100 | 1 | 41157445-41162504(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr04G001849 |
Chr04 | NC_080390.1:30150398-30150406in promoter 1938-1946 bp |
+ | 2055 bp upstream of target TSS | 100.0/ 100 | 1 | 30152461-30154423(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G002341 |
Chr02 | NC_080388.1:41131271-41131279in promoter 1830-1838 bp |
+ | 2163 bp upstream of target TSS | 100.0/ 100 | 1 | 41133442-41134837(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G002753 |
Chr02 | NC_080388.1:47559241-47559249in promoter 1612-1620 bp |
- | 2381 bp upstream of target TSS | 100.0/ 100 | 1 | 47556057-47556860(-) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G002755 |
Chr02 | NC_080388.1:47588079-47588087in promoter 1574-1582 bp |
+ | 2419 bp upstream of target TSS | 100.0/ 100 | 1 | 47590506-47591247(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G002752 |
Chr02 | NC_080388.1:47547676-47547684in promoter 1334-1342 bp |
+ | 2659 bp upstream of target TSS | 100.0/ 100 | 1 | 47542130-47545017(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr01G001373 |
Chr01 | NC_080387.1:27055789-27055797in promoter 1297-1305 bp |
- | 2696 bp upstream of target TSS | 100.0/ 100 | 1 | 27058493-27061257(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr02G003436 |
Chr02 | NC_080388.1:55599471-55599479in promoter 1137-1145 bp |
- | 2856 bp upstream of target TSS | 100.0/ 100 | 1 | 55589245-55596615(-) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G000397 |
Chr02 | NC_080388.1:4912339-4912347in promoter 976-984 bp |
+ | 3017 bp upstream of target TSS | 100.0/ 100 | 1 | 4915364-4916889(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr01G001669 |
Chr01 | NC_080387.1:30782694-30782702in promoter 872-880 bp |
- | 3121 bp upstream of target TSS | 100.0/ 100 | 1 | 30785823-30786764(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr03G002261 |
Chr03 | NC_080389.1:35622345-35622353in promoter 781-789 bp |
- | 3212 bp upstream of target TSS | 100.0/ 100 | 1 | 35615352-35619133(-) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G000143 |
Chr02 | NC_080388.1:1918562-1918570in promoter 438-446 bp |
- | 3555 bp upstream of target TSS | 100.0/ 100 | 1 | 1922125-1924139(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr03G000119 |
Chr03 | NC_080389.1:1295297-1295305in promoter 413-421 bp |
- | 3580 bp upstream of target TSS | 100.0/ 100 | 1 | 1298885-1300507(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr04G001457 |
Chr04 | NC_080390.1:23982676-23982684in promoter 371-379 bp |
+ | 3622 bp upstream of target TSS | 100.0/ 100 | 1 | 23974953-23979054(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr02G000931 |
Chr02 | NC_080388.1:16231281-16231289in promoter 311-319 bp |
+ | 3682 bp upstream of target TSS | 100.0/ 100 | 1 | 16234971-16238879(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr01G002594 |
Chr01 | NC_080387.1:44071049-44071057in promoter 258-266 bp |
+ | 3735 bp upstream of target TSS | 100.0/ 100 | 1 | 44074792-44079642(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G002138 |
Chr02 | NC_080388.1:38473987-38473995in promoter 232-240 bp |
+ | 3761 bp upstream of target TSS | 100.0/ 100 | 1 | 38477756-38480250(+) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr02G004423 |
Chr02 | NC_080388.1:66571686-66571694in promoter 207-215 bp |
- | 3786 bp upstream of target TSS | 100.0/ 100 | 1 | 66565488-66567900(-) |
SMil_00011004-RA_Salv |
MP00033 |
CCTGTCGGC |
SmilChr01G000324 |
Chr01 | NC_080387.1:6405497-6405505in promoter 200-208 bp |
- | 3793 bp upstream of target TSS | 100.0/ 100 | 1 | 6409298-6410059(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr04G001525 |
Chr04 | NC_080390.1:25176149-25176157in promoter 146-154 bp |
+ | 3847 bp upstream of target TSS | 100.0/ 100 | 1 | 25171119-25172302(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr02G000121 |
Chr02 | NC_080388.1:1639346-1639354in promoter 97-105 bp |
+ | 3896 bp upstream of target TSS | 100.0/ 100 | 1 | 1631201-1635450(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGG |
SmilChr04G000437 |
Chr04 | NC_080390.1:4628007-4628015in promoter 3974-3982 bp |
+ | 19 bp upstream of target TSS | 99.7/ 100 | 5 | 4628034-4669251(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr03G003228 |
Chr03 | NC_080389.1:50003710-50003718in promoter 942-950 bp |
- | 3051 bp upstream of target TSS | 99.7/ 100 | 5 | 49999920-50000659(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr03G003229 |
Chr03 | NC_080389.1:50013225-50013233in promoter 927-935 bp |
- | 3066 bp upstream of target TSS | 99.7/ 100 | 5 | 50008831-50010159(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G002016 |
Chr02 | NC_080388.1:36315489-36315497in promoter 3044-3052 bp |
- | 949 bp upstream of target TSS | 99.7/ 100 | 4 | 36313282-36314540(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr04G000438 |
Chr04 | NC_080390.1:4628007-4628015in promoter 1449-1457 bp |
+ | 2544 bp upstream of target TSS | 99.7/ 100 | 4 | 4630559-4635547(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr01G001696 |
Chr01 | NC_080387.1:31226051-31226059in promoter 1076-1084 bp |
- | 2917 bp upstream of target TSS | 99.7/ 100 | 4 | 31228976-31230418(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |
SmilChr02G005382 |
Chr02 | NC_080388.1:74492401-74492409in promoter 820-828 bp |
- | 3173 bp upstream of target TSS | 99.7/ 100 | 4 | 74486327-74489228(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G005178 |
Chr02 | NC_080388.1:73074892-73074900in promoter 589-597 bp |
- | 3404 bp upstream of target TSS | 99.7/ 100 | 4 | 73078304-73085938(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |
SmilChr02G000264 |
Chr02 | NC_080388.1:3422380-3422388in promoter 3755-3763 bp |
- | 238 bp upstream of target TSS | 99.7/ 100 | 3 | 3422626-3423363(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |
SmilChr04G002595 |
Chr04 | NC_080390.1:41380324-41380332in promoter 3627-3635 bp |
- | 366 bp upstream of target TSS | 99.7/ 100 | 3 | 41378180-41379958(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr01G004714 |
Chr01 | NC_080387.1:65324144-65324152in promoter 3437-3445 bp |
+ | 556 bp upstream of target TSS | 99.7/ 100 | 3 | 65324708-65326861(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr01G001121 |
Chr01 | NC_080387.1:22833160-22833168in promoter 3157-3165 bp |
- | 836 bp upstream of target TSS | 99.7/ 100 | 3 | 22831740-22832324(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G000219 |
Chr02 | NC_080388.1:2852317-2852325in promoter 3090-3098 bp |
+ | 903 bp upstream of target TSS | 99.7/ 100 | 3 | 2853228-2855703(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr03G002554 |
Chr03 | NC_080389.1:40721233-40721241in promoter 3068-3076 bp |
- | 925 bp upstream of target TSS | 99.7/ 100 | 3 | 40717137-40720308(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G003836 |
Chr02 | NC_080388.1:60040924-60040932in promoter 2771-2779 bp |
+ | 1222 bp upstream of target TSS | 99.7/ 100 | 3 | 60042154-60043220(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr04G000492 |
Chr04 | NC_080390.1:5367088-5367096in promoter 2606-2614 bp |
- | 1387 bp upstream of target TSS | 99.7/ 100 | 3 | 5364503-5365701(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G000356 |
Chr02 | NC_080388.1:4592778-4592786in promoter 2151-2159 bp |
- | 1842 bp upstream of target TSS | 99.7/ 100 | 3 | 4594628-4601151(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |
SmilChr04G001956 |
Chr04 | NC_080390.1:31750710-31750718in promoter 1944-1952 bp |
- | 2049 bp upstream of target TSS | 99.7/ 100 | 3 | 31744718-31748661(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G002555 |
Chr02 | NC_080388.1:44465205-44465213in promoter 1926-1934 bp |
- | 2067 bp upstream of target TSS | 99.7/ 100 | 3 | 44461832-44463138(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr01G001048 |
Chr01 | NC_080387.1:21770339-21770347in promoter 1818-1826 bp |
+ | 2175 bp upstream of target TSS | 99.7/ 100 | 3 | 21772522-21840439(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr02G001617 |
Chr02 | NC_080388.1:30119889-30119897in promoter 1750-1758 bp |
- | 2243 bp upstream of target TSS | 99.7/ 100 | 3 | 30116256-30117646(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr04G000436 |
Chr04 | NC_080390.1:4625129-4625137in promoter 1435-1443 bp |
+ | 2558 bp upstream of target TSS | 99.7/ 100 | 3 | 4619364-4622571(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |
SmilChr02G001035 |
Chr02 | NC_080388.1:18398015-18398023in promoter 1414-1422 bp |
+ | 2579 bp upstream of target TSS | 99.7/ 100 | 3 | 18393809-18395436(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |
SmilChr01G001502 |
Chr01 | NC_080387.1:28867637-28867645in promoter 1399-1407 bp |
- | 2594 bp upstream of target TSS | 99.7/ 100 | 3 | 28859946-28865043(-) |
SMil_00011004-RA_Salv |
MP00033 |
GCTGTCGGC |
SmilChr03G000664 |
Chr03 | NC_080389.1:7437583-7437591in promoter 1034-1042 bp |
- | 2959 bp upstream of target TSS | 99.7/ 100 | 3 | 7440550-7442221(+) |
SMil_00011004-RA_Salv |
MP00033 |
GCCGACAGC |